Variant report

Variant	rs6862527
Chromosome Location	chr5:57009388-57009389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10057804	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10487615	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12189365	0.86[ASN][1000 genomes]
rs12523004	0.81[EUR][1000 genomes]
rs12654040	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12654351	0.91[ASN][1000 genomes]
rs12654963	0.86[ASN][1000 genomes]
rs12655658	0.89[ASN][1000 genomes]
rs12658940	0.91[ASN][1000 genomes]
rs13176491	0.82[AFR][1000 genomes]
rs16887298	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2215419	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2898027	0.81[EUR][1000 genomes]
rs58041565	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58266257	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59516621	1.00[ASN][1000 genomes]
rs59697426	0.86[ASN][1000 genomes]
rs61220614	1.00[ASN][1000 genomes]
rs62361169	0.81[EUR][1000 genomes]
rs6860385	0.84[AFR][1000 genomes]
rs6894116	0.81[EUR][1000 genomes]
rs73089817	0.91[ASN][1000 genomes]
rs73089845	0.93[ASN][1000 genomes]
rs73089868	0.86[ASN][1000 genomes]
rs73089872	0.86[ASN][1000 genomes]
rs73089877	0.86[ASN][1000 genomes]
rs7714714	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7717808	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7734079	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs978225	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57001000-57012400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57005200-57009400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:57006600-57013400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:57007800-57013600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:57008000-57012400	Weak transcription	A549	lung
6	chr5:57009000-57009400	Weak transcription	Aorta	Aorta

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