Variant report

Variant	rs73089845
Chromosome Location	chr5:57012807-57012808
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10057804	0.85[ASN][1000 genomes]
rs10077188	0.83[EUR][1000 genomes]
rs10487615	0.85[ASN][1000 genomes]
rs12153068	1.00[EUR][1000 genomes]
rs12189365	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12652479	0.83[EUR][1000 genomes]
rs12654040	0.85[ASN][1000 genomes]
rs12654351	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12654850	0.83[EUR][1000 genomes]
rs12654963	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12655658	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12658940	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16887298	0.85[ASN][1000 genomes]
rs2215419	0.83[ASN][1000 genomes]
rs4700209	1.00[EUR][1000 genomes]
rs58041565	0.93[ASN][1000 genomes]
rs58245968	0.95[EUR][1000 genomes]
rs58266257	0.85[ASN][1000 genomes]
rs59516621	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59697426	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60219417	0.89[EUR][1000 genomes]
rs61220614	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6862527	0.93[ASN][1000 genomes]
rs6876911	0.89[EUR][1000 genomes]
rs6883451	0.95[EUR][1000 genomes]
rs6883485	0.95[EUR][1000 genomes]
rs73085594	1.00[EUR][1000 genomes]
rs73089817	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73089868	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73089872	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73089877	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73089897	0.83[EUR][1000 genomes]
rs7714714	0.85[ASN][1000 genomes]
rs7717808	0.85[ASN][1000 genomes]
rs7734079	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57006600-57013400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:57007800-57013600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:57009800-57016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:57009800-57016400	Weak transcription	Aorta	Aorta
5	chr5:57012400-57013000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:57012400-57013600	Enhancers	A549	lung
7	chr5:57012400-57017800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:57012800-57020000	Weak transcription	NHEK	skin

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