Variant report

Variant	rs6876911
Chromosome Location	chr5:57042657-57042658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10063478	0.82[JPT][hapmap]
rs10077188	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1016457	0.82[YRI][hapmap]
rs12153068	0.89[EUR][1000 genomes]
rs12189365	0.89[EUR][1000 genomes]
rs12652479	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12654351	0.89[EUR][1000 genomes]
rs12654850	0.83[EUR][1000 genomes]
rs12654963	0.89[EUR][1000 genomes]
rs12655658	0.89[EUR][1000 genomes]
rs12658410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12658940	0.89[EUR][1000 genomes]
rs4700209	0.89[EUR][1000 genomes]
rs58245968	0.84[EUR][1000 genomes]
rs59516621	0.89[EUR][1000 genomes]
rs60219417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61220614	0.89[EUR][1000 genomes]
rs6883451	0.84[EUR][1000 genomes]
rs6883485	0.84[EUR][1000 genomes]
rs6890613	0.81[LWK][hapmap];0.85[YRI][hapmap]
rs73085594	0.89[EUR][1000 genomes]
rs73089817	0.89[EUR][1000 genomes]
rs73089845	0.89[EUR][1000 genomes]
rs73089868	0.89[EUR][1000 genomes]
rs73089872	0.89[EUR][1000 genomes]
rs73089877	0.89[EUR][1000 genomes]
rs73089897	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73089900	0.89[EUR][1000 genomes]
rs7702309	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7713500	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs7729312	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs7731160	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7734787	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57033000-57044800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:57037800-57045000	Weak transcription	HMEC	breast
3	chr5:57041400-57043000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:57041800-57044800	Weak transcription	NHDF-Ad	bronchial
5	chr5:57041800-57045000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:57042200-57043000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:57042200-57043200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:57042400-57042800	Weak transcription	Osteobl	bone
9	chr5:57042600-57043000	Enhancers	Hela-S3	cervix
10	chr5:57042600-57048600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:57042600-57050200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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