Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10077188	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12153068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189365	1.00[EUR][1000 genomes]
rs12652479	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12654351	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12654850	0.83[EUR][1000 genomes]
rs12654963	1.00[EUR][1000 genomes]
rs12655658	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12658940	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58245968	0.95[EUR][1000 genomes]
rs59516621	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59697426	0.90[EUR][1000 genomes]
rs60219417	0.89[EUR][1000 genomes]
rs61220614	1.00[EUR][1000 genomes]
rs6876911	0.89[EUR][1000 genomes]
rs6883451	0.95[EUR][1000 genomes]
rs6883485	0.95[EUR][1000 genomes]
rs73085594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73089817	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089845	1.00[EUR][1000 genomes]
rs73089868	1.00[EUR][1000 genomes]
rs73089872	1.00[EUR][1000 genomes]
rs73089877	1.00[EUR][1000 genomes]
rs73089897	0.83[EUR][1000 genomes]
rs7702309	1.00[CEU][hapmap]
rs7713500	1.00[CEU][hapmap]
rs7729312	1.00[CEU][hapmap]
rs7731160	1.00[CEU][hapmap]
rs7734787	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830309	chr5:56837590-56978283	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:56946800-56961200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:56950400-56956200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:56950600-56957400	Weak transcription	Fetal Heart	heart
4	chr5:56950800-56959200	Weak transcription	Right Ventricle	heart
5	chr5:56954400-56956800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:56954600-56959000	Weak transcription	Brain Anterior Caudate	brain
7	chr5:56954600-56959000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:56955200-56960600	Weak transcription	Liver	Liver
9	chr5:56955600-56956800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:56955600-56957000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:56955800-56956000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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