Variant report

Variant	rs12189365
Chromosome Location	chr5:57028405-57028406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10057804	0.81[ASN][1000 genomes]
rs10077188	0.83[EUR][1000 genomes]
rs10487615	0.81[ASN][1000 genomes]
rs12153068	1.00[EUR][1000 genomes]
rs12652479	0.83[EUR][1000 genomes]
rs12654040	0.81[ASN][1000 genomes]
rs12654351	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12654850	0.83[EUR][1000 genomes]
rs12654963	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655658	1.00[EUR][1000 genomes]
rs12658940	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16887298	0.81[ASN][1000 genomes]
rs4700209	1.00[EUR][1000 genomes]
rs58041565	0.86[ASN][1000 genomes]
rs58245968	0.95[EUR][1000 genomes]
rs58266257	0.81[ASN][1000 genomes]
rs59516621	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59697426	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60219417	0.89[EUR][1000 genomes]
rs61220614	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6862527	0.86[ASN][1000 genomes]
rs6876911	0.89[EUR][1000 genomes]
rs6883451	0.95[EUR][1000 genomes]
rs6883485	0.95[EUR][1000 genomes]
rs73085594	1.00[EUR][1000 genomes]
rs73089817	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73089845	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73089868	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73089872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73089877	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73089897	0.83[EUR][1000 genomes]
rs7714714	0.81[ASN][1000 genomes]
rs7717808	0.81[ASN][1000 genomes]
rs7734079	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57021800-57029200	Weak transcription	Aorta	Aorta
2	chr5:57021800-57030400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:57028400-57028600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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