Variant report

Variant	rs73089877
Chromosome Location	chr5:57033838-57033839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57033186..57035087-chr5:57055058..57057666,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10057804	0.81[ASN][1000 genomes]
rs10077188	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10487615	0.81[ASN][1000 genomes]
rs12153068	1.00[EUR][1000 genomes]
rs12189365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652479	0.83[EUR][1000 genomes]
rs12654040	0.81[ASN][1000 genomes]
rs12654351	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12654850	0.83[EUR][1000 genomes]
rs12654963	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655658	1.00[EUR][1000 genomes]
rs12658940	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16887298	0.81[ASN][1000 genomes]
rs4700209	1.00[EUR][1000 genomes]
rs58041565	0.86[ASN][1000 genomes]
rs58245968	0.95[EUR][1000 genomes]
rs58266257	0.81[ASN][1000 genomes]
rs59516621	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59697426	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60219417	0.89[EUR][1000 genomes]
rs61220614	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6862527	0.86[ASN][1000 genomes]
rs6876911	0.89[EUR][1000 genomes]
rs6883451	0.95[EUR][1000 genomes]
rs6883485	0.95[EUR][1000 genomes]
rs73085594	1.00[EUR][1000 genomes]
rs73089817	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73089845	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73089868	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73089872	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73089897	0.83[EUR][1000 genomes]
rs7714714	0.81[ASN][1000 genomes]
rs7717808	0.81[ASN][1000 genomes]
rs7734079	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57029000-57034600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:57029800-57034600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:57030000-57034400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:57030000-57034600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:57031200-57034400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:57031600-57034200	Enhancers	HSMM	muscle
7	chr5:57032000-57034600	Enhancers	Fetal Lung	lung
8	chr5:57032200-57034800	Enhancers	Fetal Brain Male	brain
9	chr5:57032400-57034800	Enhancers	A549	lung
10	chr5:57032400-57040600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:57032800-57034000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:57032800-57035600	Weak transcription	Fetal Intestine Large	intestine
13	chr5:57032800-57036400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:57032800-57037200	Weak transcription	NHEK	skin
15	chr5:57033000-57034000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:57033000-57035600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:57033000-57035600	Weak transcription	HUVEC	blood vessel
18	chr5:57033000-57036200	Weak transcription	Osteobl	bone
19	chr5:57033000-57036800	Weak transcription	Hela-S3	cervix
20	chr5:57033000-57041400	Weak transcription	NH-A	brain
21	chr5:57033000-57044800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:57033200-57034200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:57033200-57036800	Weak transcription	HMEC	breast
24	chr5:57033400-57036000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:57033400-57036800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:57033400-57041600	Weak transcription	NHDF-Ad	bronchial
27	chr5:57033600-57034200	Enhancers	Fetal Kidney	kidney
28	chr5:57033600-57034200	Weak transcription	HSMMtube	muscle
29	chr5:57033800-57034400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr5:57033800-57034600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:57033800-57034600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr5:57033800-57034800	Enhancers	Fetal Intestine Small	intestine

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