Variant report

Variant	rs12655658
Chromosome Location	chr5:56986348-56986349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10057804	0.98[ASN][1000 genomes]
rs10077188	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10487615	0.98[ASN][1000 genomes]
rs12153068	1.00[EUR][1000 genomes]
rs12189365	1.00[EUR][1000 genomes]
rs12652479	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12654040	0.98[ASN][1000 genomes]
rs12654351	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12654850	0.83[EUR][1000 genomes]
rs12654963	1.00[EUR][1000 genomes]
rs12658940	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16887298	0.98[ASN][1000 genomes]
rs2215419	0.96[ASN][1000 genomes]
rs4700209	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58041565	0.89[ASN][1000 genomes]
rs58245968	0.95[EUR][1000 genomes]
rs58266257	0.98[ASN][1000 genomes]
rs59516621	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59697426	0.90[EUR][1000 genomes]
rs60219417	0.89[EUR][1000 genomes]
rs61220614	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6862527	0.89[ASN][1000 genomes]
rs6876911	0.89[EUR][1000 genomes]
rs6883451	0.95[EUR][1000 genomes]
rs6883485	0.95[EUR][1000 genomes]
rs73085594	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089817	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73089845	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73089868	1.00[EUR][1000 genomes]
rs73089872	1.00[EUR][1000 genomes]
rs73089877	1.00[EUR][1000 genomes]
rs73089897	0.83[EUR][1000 genomes]
rs7702309	1.00[CEU][hapmap]
rs7713500	1.00[CEU][hapmap]
rs7714714	0.98[ASN][1000 genomes]
rs7717808	0.98[ASN][1000 genomes]
rs7729312	1.00[CEU][hapmap]
rs7731160	1.00[CEU][hapmap]
rs7734079	0.98[ASN][1000 genomes]
rs7734787	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:56972400-56988400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:56979600-56986800	Weak transcription	K562	blood
3	chr5:56979600-56987000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:56980400-56987200	Weak transcription	Ovary	ovary
5	chr5:56984000-56988000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:56984000-56988200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:56984000-56988400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:56984200-56988400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:56984200-56988400	Weak transcription	HMEC	breast
10	chr5:56984200-56988400	Weak transcription	NHEK	skin
11	chr5:56984200-56988600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:56984600-56988400	Weak transcription	Psoas Muscle	Psoas
13	chr5:56985600-56990400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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