Variant report

Variant	rs10077188
Chromosome Location	chr5:57065675-57065676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57064652..57067649-chr5:57101183..57103677,2	MCF-7	breast:
2	chr5:57065287..57067077-chr5:57755342..57758128,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10063478	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12153068	0.83[EUR][1000 genomes]
rs12189365	0.83[EUR][1000 genomes]
rs12652479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12654351	0.83[EUR][1000 genomes]
rs12654850	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654963	0.83[EUR][1000 genomes]
rs12655658	0.83[EUR][1000 genomes]
rs12658410	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12658940	0.83[EUR][1000 genomes]
rs28489989	0.81[ASN][1000 genomes]
rs4700209	0.83[EUR][1000 genomes]
rs59516621	0.83[EUR][1000 genomes]
rs60219417	0.83[EUR][1000 genomes]
rs61220614	0.83[EUR][1000 genomes]
rs6876911	0.83[EUR][1000 genomes]
rs73085594	0.83[EUR][1000 genomes]
rs73089817	0.83[EUR][1000 genomes]
rs73089845	0.83[EUR][1000 genomes]
rs73089868	0.83[EUR][1000 genomes]
rs73089872	0.83[EUR][1000 genomes]
rs73089877	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73089897	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73089900	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7713500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7729312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7731160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7734787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57062200-57075000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:57064800-57068400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:57065200-57072400	Weak transcription	Osteobl	bone
4	chr5:57065400-57076000	Weak transcription	Aorta	Aorta
5	chr5:57065600-57066600	Enhancers	Primary T cells from cord blood	blood
6	chr5:57065600-57071800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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