Variant report
| Variant | rs12654850 |
|---|---|
| Chromosome Location | chr5:57059982-57059983 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10063478 | 0.83[ASN][1000 genomes] |
| rs10077188 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12153068 | 0.83[EUR][1000 genomes] |
| rs12189365 | 0.83[EUR][1000 genomes] |
| rs12652479 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12654351 | 0.83[EUR][1000 genomes] |
| rs12654963 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12655658 | 0.83[EUR][1000 genomes] |
| rs12658410 | 0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12658940 | 0.83[EUR][1000 genomes] |
| rs28489989 | 0.81[ASN][1000 genomes] |
| rs4700209 | 0.83[EUR][1000 genomes] |
| rs59516621 | 0.83[EUR][1000 genomes] |
| rs60219417 | 0.83[EUR][1000 genomes] |
| rs61220614 | 0.83[EUR][1000 genomes] |
| rs6876911 | 0.83[EUR][1000 genomes] |
| rs73085594 | 0.83[EUR][1000 genomes] |
| rs73089817 | 0.83[EUR][1000 genomes] |
| rs73089845 | 0.83[EUR][1000 genomes] |
| rs73089868 | 0.83[EUR][1000 genomes] |
| rs73089872 | 0.83[EUR][1000 genomes] |
| rs73089877 | 0.83[EUR][1000 genomes] |
| rs73089897 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73089900 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7702309 | 0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7713500 | 0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7729312 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7731160 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7734787 | 0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv525330 | chr5:56931673-57320343 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv2756302 | chr5:56978143-57180143 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830310 | chr5:56989346-57176006 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv2763454 | chr5:57006531-57161140 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:57056400-57065200 | Weak transcription | Aorta | Aorta |
| 2 | chr5:57058400-57062000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
