Variant report

Variant	rs7734079
Chromosome Location	chr5:56991007-56991008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10057804	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487615	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189365	0.81[ASN][1000 genomes]
rs12523004	0.81[EUR][1000 genomes]
rs12654040	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654351	1.00[ASN][1000 genomes]
rs12654963	0.81[ASN][1000 genomes]
rs12655658	0.98[ASN][1000 genomes]
rs12658940	1.00[ASN][1000 genomes]
rs16887298	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215419	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2898027	0.81[EUR][1000 genomes]
rs58041565	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58266257	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59516621	0.91[ASN][1000 genomes]
rs59697426	0.81[ASN][1000 genomes]
rs61220614	0.91[ASN][1000 genomes]
rs62361169	0.81[EUR][1000 genomes]
rs6862527	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6894116	0.81[EUR][1000 genomes]
rs73089817	1.00[ASN][1000 genomes]
rs73089845	0.85[ASN][1000 genomes]
rs73089868	0.81[ASN][1000 genomes]
rs73089872	0.81[ASN][1000 genomes]
rs73089877	0.81[ASN][1000 genomes]
rs7714714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717808	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:56986800-56991800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:56987000-56992800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:56987400-56994800	Weak transcription	Right Ventricle	heart
4	chr5:56987600-56991400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:56987600-56991800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:56988200-56993400	Enhancers	Brain Angular Gyrus	brain
7	chr5:56988400-56991600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:56988400-56991800	Enhancers	Fetal Lung	lung
9	chr5:56988600-56995400	Enhancers	Adipose Nuclei	Adipose
10	chr5:56989000-56992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:56989200-56991200	Weak transcription	Esophagus	oesophagus
12	chr5:56989200-56991200	Weak transcription	Fetal Muscle Leg	muscle
13	chr5:56989200-56991600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr5:56989400-56991200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr5:56989400-56996000	Enhancers	Fetal Heart	heart
16	chr5:56989600-56991200	Weak transcription	Aorta	Aorta
17	chr5:56989600-56991800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:56989600-56992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:56989600-56992200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr5:56989600-56992600	Weak transcription	NHLF	lung
21	chr5:56989600-56993000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr5:56989600-56993400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr5:56989600-56994000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:56989600-56994600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr5:56989600-56996400	Weak transcription	Psoas Muscle	Psoas
26	chr5:56989800-56991800	Weak transcription	K562	blood
27	chr5:56989800-56992000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr5:56989800-56992200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr5:56989800-56992600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr5:56989800-56992600	Weak transcription	NHDF-Ad	bronchial
31	chr5:56989800-56993000	Enhancers	Brain Anterior Caudate	brain
32	chr5:56989800-56993600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr5:56989800-56993600	Weak transcription	HSMM	muscle
34	chr5:56990000-56992000	Weak transcription	HUVEC	blood vessel
35	chr5:56990000-56992600	Weak transcription	Osteobl	bone
36	chr5:56990000-56993600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:56990000-56995200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:56990200-56992000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr5:56990200-56992000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr5:56990200-56993000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr5:56990200-56993000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:56990200-56993000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:56990200-56993200	Enhancers	Brain Substantia Nigra	brain
44	chr5:56990200-57005600	Weak transcription	NH-A	brain
45	chr5:56990400-56991400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:56990400-56992600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr5:56990400-56992800	Enhancers	Brain Cingulate Gyrus	brain
48	chr5:56990400-56992800	Enhancers	Fetal Intestine Small	intestine
49	chr5:56990400-56996200	Enhancers	HMEC	breast
50	chr5:56990600-56991400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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