Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16889030	1.00[EUR][1000 genomes]
rs4506039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59280764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60503247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61300914	1.00[EUR][1000 genomes]
rs6907894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389743	1.00[EUR][1000 genomes]
rs73389773	1.00[EUR][1000 genomes]
rs73389776	1.00[EUR][1000 genomes]
rs73391951	1.00[EUR][1000 genomes]
rs73391956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391967	1.00[EUR][1000 genomes]
rs73394004	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394046	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807711	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24196400-24205400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
3	chr6:24201600-24206000	Weak transcription	Fetal Kidney	kidney
4	chr6:24204600-24207000	Genic enhancers	HepG2	liver

Quick Search: