Variant report

Variant	rs73396004
Chromosome Location	chr6:24287066-24287067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11754080	0.94[AFR][1000 genomes]
rs16889030	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17302512	0.94[AFR][1000 genomes]
rs17302582	0.94[AFR][1000 genomes]
rs17302729	0.90[AFR][1000 genomes]
rs28921369	0.94[AFR][1000 genomes]
rs28924368	0.94[AFR][1000 genomes]
rs3789225	0.94[AFR][1000 genomes]
rs3789227	0.94[AFR][1000 genomes]
rs4506039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59280764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60503247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61300914	1.00[EUR][1000 genomes]
rs66492054	0.89[AFR][1000 genomes]
rs66531067	0.98[AFR][1000 genomes]
rs66735044	0.94[AFR][1000 genomes]
rs67482549	0.94[AFR][1000 genomes]
rs67939976	0.87[AFR][1000 genomes]
rs68182041	0.94[AFR][1000 genomes]
rs6906832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830865	0.96[AFR][1000 genomes]
rs73389743	1.00[EUR][1000 genomes]
rs73389773	1.00[EUR][1000 genomes]
rs73389776	1.00[EUR][1000 genomes]
rs73391951	1.00[EUR][1000 genomes]
rs73391956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391967	1.00[EUR][1000 genomes]
rs73394004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394078	0.96[AFR][1000 genomes]
rs73394097	0.94[AFR][1000 genomes]
rs73394100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396022	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396024	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807711	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24284000-24288400	Weak transcription	Spleen	Spleen
2	chr6:24284200-24292000	Weak transcription	Fetal Intestine Large	intestine
3	chr6:24284200-24294200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:24284600-24292000	Weak transcription	A549	lung
5	chr6:24284600-24302800	Weak transcription	Pancreas	Pancrea
6	chr6:24285000-24287800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:24286600-24287800	Strong transcription	Fetal Kidney	kidney
8	chr6:24286800-24288200	Genic enhancers	HepG2	liver
9	chr6:24287000-24287400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:24287000-24288000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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