Variant report

Variant	rs73389743
Chromosome Location	chr6:24103013-24103014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs4506039	1.00[EUR][1000 genomes]
rs59280764	1.00[EUR][1000 genomes]
rs60503247	1.00[EUR][1000 genomes]
rs61300914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906832	1.00[EUR][1000 genomes]
rs6907894	1.00[EUR][1000 genomes]
rs6932594	1.00[EUR][1000 genomes]
rs73385614	1.00[EUR][1000 genomes]
rs73385618	1.00[EUR][1000 genomes]
rs73389773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391951	1.00[EUR][1000 genomes]
rs73391956	1.00[EUR][1000 genomes]
rs73391963	1.00[EUR][1000 genomes]
rs73391967	1.00[EUR][1000 genomes]
rs73394004	1.00[EUR][1000 genomes]
rs73394046	1.00[EUR][1000 genomes]
rs73394053	1.00[EUR][1000 genomes]
rs73394070	1.00[EUR][1000 genomes]
rs73394072	1.00[EUR][1000 genomes]
rs73394100	1.00[EUR][1000 genomes]
rs73396004	1.00[EUR][1000 genomes]
rs7745031	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24097800-24103800	Weak transcription	Brain Germinal Matrix	brain
2	chr6:24101000-24126200	Weak transcription	Pancreas	Pancrea
3	chr6:24101400-24106400	Weak transcription	Fetal Brain Male	brain
4	chr6:24101600-24105200	Weak transcription	Fetal Brain Female	brain
5	chr6:24101800-24104200	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links