Variant report

Variant	rs73394100
Chromosome Location	chr6:24284426-24284427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:24283175..24284815-chr6:24359561..24361041,12	MCF-7	breast:
2	chr6:24282520..24284715-chr6:24405070..24407671,2	MCF-7	breast:
3	chr6:24281828..24284999-chr6:24354828..24358110,4	MCF-7	breast:
4	chr2:27975663..27977843-chr6:24284070..24286827,2	MCF-7	breast:
5	chr6:24282573..24285599-chr6:24386965..24389138,3	K562	blood:
6	chr6:24281863..24285014-chr6:24356615..24360077,4	MCF-7	breast:
7	chr6:24282327..24284460-chr6:24388227..24391209,2	MCF-7	breast:
8	chr6:24282475..24284958-chr6:24289359..24291059,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146038	Chromatin interaction
ENSG00000146049	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11754080	0.94[AFR][1000 genomes]
rs16889030	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17302512	0.94[AFR][1000 genomes]
rs17302582	0.94[AFR][1000 genomes]
rs17302729	0.90[AFR][1000 genomes]
rs28921369	0.94[AFR][1000 genomes]
rs28924368	0.94[AFR][1000 genomes]
rs3789225	0.94[AFR][1000 genomes]
rs3789227	0.94[AFR][1000 genomes]
rs4506039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59280764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60503247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61300914	1.00[EUR][1000 genomes]
rs66492054	0.89[AFR][1000 genomes]
rs66531067	0.98[AFR][1000 genomes]
rs66735044	0.94[AFR][1000 genomes]
rs67482549	0.94[AFR][1000 genomes]
rs67939976	0.87[AFR][1000 genomes]
rs68182041	0.94[AFR][1000 genomes]
rs6906832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830865	0.96[AFR][1000 genomes]
rs73389743	1.00[EUR][1000 genomes]
rs73389773	1.00[EUR][1000 genomes]
rs73389776	1.00[EUR][1000 genomes]
rs73391951	1.00[EUR][1000 genomes]
rs73391956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391967	1.00[EUR][1000 genomes]
rs73394004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394078	0.96[AFR][1000 genomes]
rs73394097	0.94[AFR][1000 genomes]
rs73396004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396022	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396024	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807711	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24282600-24284600	Enhancers	Fetal Muscle Leg	muscle
2	chr6:24282800-24284600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:24282800-24284600	Enhancers	GM12878-XiMat	blood
4	chr6:24283000-24284600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:24283400-24284600	Enhancers	Colon Smooth Muscle	Colon
6	chr6:24283400-24284600	Enhancers	Fetal Muscle Trunk	muscle
7	chr6:24283600-24284600	Enhancers	Left Ventricle	heart
8	chr6:24283800-24285000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:24284000-24284600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:24284000-24284600	Enhancers	A549	lung
11	chr6:24284000-24287000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:24284000-24288400	Weak transcription	Spleen	Spleen
13	chr6:24284200-24284600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:24284200-24284600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:24284200-24284600	Enhancers	Fetal Heart	heart
16	chr6:24284200-24292000	Weak transcription	Fetal Intestine Large	intestine
17	chr6:24284200-24294200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:24284400-24284600	Enhancers	Pancreas	Pancrea
19	chr6:24284400-24284600	Enhancers	HepG2	liver
20	chr6:24284400-24286400	Weak transcription	Fetal Kidney	kidney

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