Variant report

Variant	rs6926790
Chromosome Location	chr6:147643190-147643191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147640420..147643294-chr6:147648350..147651490,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10440889	1.00[AFR][1000 genomes]
rs60712264	0.82[AFR][1000 genomes]
rs6927420	1.00[ASW][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs6932818	0.83[AFR][1000 genomes]
rs9485152	0.82[AFR][1000 genomes]
rs9485154	0.88[AFR][1000 genomes]
rs9497699	0.82[AFR][1000 genomes]
rs9497700	0.82[AFR][1000 genomes]
rs9497701	0.82[AFR][1000 genomes]
rs9497721	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9497722	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9497726	1.00[ASW][hapmap];0.82[AFR][1000 genomes]
rs9497728	0.88[AFR][1000 genomes]
rs9497731	0.88[AFR][1000 genomes]
rs9497734	0.88[AFR][1000 genomes]
rs9497741	0.88[AFR][1000 genomes]
rs9497743	0.82[AFR][1000 genomes]
rs9497751	0.82[AFR][1000 genomes]
rs9497754	0.82[AFR][1000 genomes]
rs9497765	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv886755	chr6:147577646-147729477	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv886756	chr6:147580697-147729477	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv830839	chr6:147584914-147757264	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv886757	chr6:147591022-147729477	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147584400-147684600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:147607400-147707400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:147609800-147667000	Weak transcription	NHEK	skin
4	chr6:147610200-147700200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:147617400-147643200	Weak transcription	Colonic Mucosa	Colon
6	chr6:147617400-147680200	Weak transcription	Small Intestine	intestine
7	chr6:147618600-147648400	Weak transcription	HSMMtube	muscle
8	chr6:147618600-147649000	Weak transcription	Fetal Kidney	kidney
9	chr6:147619000-147643200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:147619200-147690200	Weak transcription	Fetal Heart	heart
11	chr6:147619800-147643200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:147619800-147648400	Weak transcription	Fetal Brain Male	brain
13	chr6:147622600-147708200	Weak transcription	Psoas Muscle	Psoas
14	chr6:147625600-147643200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:147625600-147647000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:147625600-147648600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:147625800-147651200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:147625800-147664600	Weak transcription	Spleen	Spleen
19	chr6:147625800-147667400	Weak transcription	Gastric	stomach
20	chr6:147626000-147643400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:147626000-147645000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:147626000-147648600	Weak transcription	Fetal Stomach	stomach
23	chr6:147626000-147650600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:147626000-147687000	Weak transcription	Lung	lung
25	chr6:147626000-147700200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:147626200-147643400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:147626200-147643600	Weak transcription	Thymus	Thymus
28	chr6:147626200-147662600	Weak transcription	Pancreas	Pancrea
29	chr6:147626200-147670200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:147626200-147684000	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:147626200-147684000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:147626200-147687200	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:147626200-147707600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:147626400-147655400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:147626400-147700000	Weak transcription	Brain Germinal Matrix	brain
36	chr6:147627200-147643400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:147628000-147648600	Weak transcription	Fetal Intestine Small	intestine
38	chr6:147628000-147648600	Weak transcription	Right Ventricle	heart
39	chr6:147628000-147668000	Weak transcription	Aorta	Aorta
40	chr6:147628200-147687000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:147631400-147707200	Weak transcription	Hela-S3	cervix
42	chr6:147631800-147643200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:147632000-147643200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr6:147632000-147648800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:147632400-147643600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:147633200-147650000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr6:147633800-147684400	Weak transcription	Ovary	ovary
48	chr6:147634800-147650000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:147635200-147643200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr6:147635800-147647600	Weak transcription	Placenta	Placenta

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