Variant report

Variant	rs9497765
Chromosome Location	chr6:147715464-147715465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147710173..147716177-chr6:147716262..147720570,6	K562	blood:
2	chr6:147714068..147716461-chr6:147718177..147720474,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10440889	0.88[AFR][1000 genomes]
rs60712264	0.94[AFR][1000 genomes]
rs6926790	0.88[AFR][1000 genomes]
rs6927420	1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6932818	0.83[AFR][1000 genomes]
rs9485152	0.94[AFR][1000 genomes]
rs9485154	1.00[AFR][1000 genomes]
rs9485162	0.88[AFR][1000 genomes]
rs9497721	0.94[AFR][1000 genomes]
rs9497722	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9497726	1.00[MKK][hapmap];0.94[AFR][1000 genomes]
rs9497728	1.00[AFR][1000 genomes]
rs9497730	0.88[AFR][1000 genomes]
rs9497731	1.00[AFR][1000 genomes]
rs9497734	1.00[AFR][1000 genomes]
rs9497741	1.00[AFR][1000 genomes]
rs9497743	0.94[AFR][1000 genomes]
rs9497751	0.94[AFR][1000 genomes]
rs9497754	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv886755	chr6:147577646-147729477	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv886756	chr6:147580697-147729477	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv830839	chr6:147584914-147757264	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv886757	chr6:147591022-147729477	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv886759	chr6:147686274-147764267	Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147680400-147721800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:147687800-147724600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:147704200-147717600	Weak transcription	Fetal Stomach	stomach
4	chr6:147706400-147715600	Weak transcription	Aorta	Aorta
5	chr6:147706400-147715600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:147706400-147715800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:147706400-147715800	Weak transcription	HMEC	breast
8	chr6:147706400-147716800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:147706600-147716000	Weak transcription	HSMM	muscle
10	chr6:147706800-147716800	Weak transcription	Fetal Kidney	kidney
11	chr6:147707200-147715600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:147707400-147715800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:147707400-147716200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:147707400-147718400	Weak transcription	K562	blood
15	chr6:147709200-147716800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:147709400-147715600	Weak transcription	NHDF-Ad	bronchial
17	chr6:147709600-147715800	Weak transcription	Osteobl	bone
18	chr6:147709800-147718600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:147711200-147716000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:147714200-147715800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:147714400-147716200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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