Variant report

Variant	rs9497722
Chromosome Location	chr6:147517164-147517165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147503507..147505351-chr6:147515966..147518397,2	K562	blood:
2	chr6:147514297..147518572-chr6:147531601..147534869,4	K562	blood:
3	chr6:147513938..147517970-chr6:147521795..147525316,6	MCF-7	breast:
4	chr6:147516623..147520758-chr6:147522602..147524809,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10440889	0.82[AFR][1000 genomes]
rs11961162	0.94[AFR][1000 genomes]
rs11963479	0.94[AFR][1000 genomes]
rs60712264	0.88[AFR][1000 genomes]
rs6926790	0.82[AFR][1000 genomes]
rs6927420	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9485139	0.88[AFR][1000 genomes]
rs9485152	1.00[AFR][1000 genomes]
rs9485154	0.94[AFR][1000 genomes]
rs9485162	0.82[AFR][1000 genomes]
rs9497688	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9497699	0.88[AFR][1000 genomes]
rs9497700	0.88[AFR][1000 genomes]
rs9497701	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9497721	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9497726	0.88[AFR][1000 genomes]
rs9497728	0.94[AFR][1000 genomes]
rs9497730	0.82[AFR][1000 genomes]
rs9497731	0.94[AFR][1000 genomes]
rs9497734	0.94[AFR][1000 genomes]
rs9497741	0.94[AFR][1000 genomes]
rs9497743	1.00[AFR][1000 genomes]
rs9497751	0.88[AFR][1000 genomes]
rs9497754	0.88[AFR][1000 genomes]
rs9497765	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147508000-147517800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:147514800-147517200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:147514800-147517200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:147514800-147517400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:147515200-147517800	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:147515200-147518000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:147515400-147517400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:147515600-147517600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:147515800-147517200	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:147515800-147517400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr6:147515800-147517400	Enhancers	NHDF-Ad	bronchial
12	chr6:147516000-147517200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:147516400-147519000	Enhancers	K562	blood
14	chr6:147516600-147517200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr6:147516600-147522800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:147516600-147523000	Weak transcription	Osteobl	bone
17	chr6:147516800-147517200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr6:147516800-147523000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:147516800-147523000	Weak transcription	HUVEC	blood vessel
20	chr6:147517000-147517200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr6:147517000-147518400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:147517000-147518600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:147517000-147522800	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links