Variant report

Variant	rs9497726
Chromosome Location	chr6:147543680-147543681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:147252177..147253046-chr6:147543398..147544034,2	MCF-7	breast:
2	chr6:147215337..147217786-chr6:147543040..147544662,2	K562	blood:
3	chr6:147205783..147208504-chr6:147543534..147546293,2	K562	blood:
4	chr6:147542165..147544877-chr6:147580588..147582503,2	K562	blood:
5	chr6:147541756..147544397-chr6:147547163..147549434,2	MCF-7	breast:
6	chr6:147518626..147520972-chr6:147541650..147544100,2	MCF-7	breast:
7	chr6:147236068..147238038-chr6:147542284..147544825,2	K562	blood:
8	chr6:147481284..147483476-chr6:147542253..147543860,2	K562	blood:
9	chr6:147469724..147472590-chr6:147543347..147545672,2	K562	blood:
10	chr6:147178357..147179230-chr6:147543410..147544182,3	K562	blood:
11	chr6:147221788..147226460-chr6:147542201..147549451,7	K562	blood:
12	chr6:147232975..147234547-chr6:147542627..147545100,2	K562	blood:
13	chr6:147522872..147525730-chr6:147542858..147544761,2	MCF-7	breast:
14	chr6:147524840..147526974-chr6:147542411..147544286,3	MCF-7	breast:
15	chr6:147541961..147544233-chr6:147614888..147617069,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STXBP5-4	chr6:147543558-147543821	NONHSAT115448

No data

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction
ENSG00000164506	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10440889	0.82[AFR][1000 genomes]
rs11961162	0.94[AFR][1000 genomes]
rs11963479	0.94[AFR][1000 genomes]
rs60712264	0.88[AFR][1000 genomes]
rs6926790	0.82[AFR][1000 genomes]
rs6927420	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[AFR][1000 genomes]
rs9485139	0.88[AFR][1000 genomes]
rs9485152	0.88[AFR][1000 genomes]
rs9485154	0.94[AFR][1000 genomes]
rs9485162	0.82[AFR][1000 genomes]
rs9497688	0.88[AFR][1000 genomes]
rs9497699	0.88[AFR][1000 genomes]
rs9497700	0.88[AFR][1000 genomes]
rs9497701	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[AFR][1000 genomes]
rs9497721	0.88[AFR][1000 genomes]
rs9497722	0.88[AFR][1000 genomes]
rs9497728	0.94[AFR][1000 genomes]
rs9497730	0.82[AFR][1000 genomes]
rs9497731	0.94[AFR][1000 genomes]
rs9497734	0.94[AFR][1000 genomes]
rs9497741	0.94[AFR][1000 genomes]
rs9497743	0.88[AFR][1000 genomes]
rs9497751	0.88[AFR][1000 genomes]
rs9497754	0.88[AFR][1000 genomes]
rs9497765	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147526000-147572200	Weak transcription	Lung	lung
2	chr6:147527200-147544400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:147527200-147547400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:147527200-147548400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:147527200-147549000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:147527200-147557800	Weak transcription	Fetal Stomach	stomach
7	chr6:147527200-147570000	Weak transcription	Left Ventricle	heart
8	chr6:147527200-147572000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:147527200-147572200	Weak transcription	Esophagus	oesophagus
10	chr6:147527400-147558800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:147527400-147563800	Weak transcription	NH-A	brain
12	chr6:147527400-147566800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:147527400-147576400	Weak transcription	HSMMtube	muscle
14	chr6:147527600-147549200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:147527600-147559600	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:147527800-147586800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:147528200-147551800	Weak transcription	HUVEC	blood vessel
18	chr6:147528800-147545000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:147528800-147549000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:147528800-147565800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:147528800-147572000	Weak transcription	A549	lung
22	chr6:147529000-147544800	Weak transcription	Brain Angular Gyrus	brain
23	chr6:147529000-147572200	Weak transcription	Aorta	Aorta
24	chr6:147529400-147571800	Weak transcription	Fetal Brain Male	brain
25	chr6:147529600-147549000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:147529800-147549000	Weak transcription	HMEC	breast
27	chr6:147530000-147572000	Weak transcription	NHEK	skin
28	chr6:147530200-147548600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:147531400-147544800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:147531400-147548800	Weak transcription	Hela-S3	cervix
31	chr6:147533200-147572200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:147534000-147550800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:147534000-147572200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:147535800-147557600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:147537600-147572200	Weak transcription	Ovary	ovary
36	chr6:147537800-147571600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:147538200-147572200	Weak transcription	Spleen	Spleen
38	chr6:147538400-147572200	Weak transcription	Fetal Lung	lung
39	chr6:147538600-147549200	Weak transcription	Brain Germinal Matrix	brain
40	chr6:147538800-147572200	Weak transcription	Placenta	Placenta
41	chr6:147540000-147544000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:147540200-147549000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:147540200-147559200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr6:147540200-147569600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:147540200-147572000	Weak transcription	Thymus	Thymus
46	chr6:147540400-147546600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:147540800-147561800	Weak transcription	Fetal Kidney	kidney
48	chr6:147541600-147545600	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr6:147541800-147543800	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr6:147541800-147543800	Genic enhancers	Muscle Satellite Cultured Cells	--

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