Variant report

Variant	rs9497734
Chromosome Location	chr6:147582102-147582103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147542165..147544877-chr6:147580588..147582503,2	K562	blood:
2	chr6:147581185..147584248-chr6:147632695..147636064,3	K562	blood:
3	chr6:147579053..147583009-chr6:147587087..147590128,3	K562	blood:
4	chr6:147570692..147572642-chr6:147580577..147582832,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10440889	0.88[AFR][1000 genomes]
rs11961162	1.00[AFR][1000 genomes]
rs11963479	1.00[AFR][1000 genomes]
rs60712264	0.94[AFR][1000 genomes]
rs6926790	0.88[AFR][1000 genomes]
rs6927420	1.00[AFR][1000 genomes]
rs6932818	0.83[AFR][1000 genomes]
rs9485139	0.94[AFR][1000 genomes]
rs9485152	0.94[AFR][1000 genomes]
rs9485154	1.00[AFR][1000 genomes]
rs9485162	0.88[AFR][1000 genomes]
rs9497688	0.94[AFR][1000 genomes]
rs9497699	0.94[AFR][1000 genomes]
rs9497700	0.94[AFR][1000 genomes]
rs9497701	0.94[AFR][1000 genomes]
rs9497721	0.94[AFR][1000 genomes]
rs9497722	0.94[AFR][1000 genomes]
rs9497726	0.94[AFR][1000 genomes]
rs9497728	1.00[AFR][1000 genomes]
rs9497730	0.88[AFR][1000 genomes]
rs9497731	1.00[AFR][1000 genomes]
rs9497741	1.00[AFR][1000 genomes]
rs9497743	0.94[AFR][1000 genomes]
rs9497751	0.94[AFR][1000 genomes]
rs9497754	0.94[AFR][1000 genomes]
rs9497765	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv886755	chr6:147577646-147729477	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv886756	chr6:147580697-147729477	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147527800-147586800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:147542400-147590800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:147543800-147588800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:147545600-147617000	Weak transcription	Small Intestine	intestine
5	chr6:147549400-147616800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:147549600-147584600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:147549600-147587200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:147552600-147591800	Weak transcription	HUVEC	blood vessel
9	chr6:147554600-147590000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:147561600-147600800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:147562600-147599800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:147564000-147586800	Weak transcription	HMEC	breast
13	chr6:147564400-147604600	Weak transcription	NHLF	lung
14	chr6:147564400-147619000	Weak transcription	Hela-S3	cervix
15	chr6:147564600-147608800	Weak transcription	NH-A	brain
16	chr6:147564600-147617000	Weak transcription	Fetal Kidney	kidney
17	chr6:147570200-147587200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:147570600-147609000	Weak transcription	Brain Substantia Nigra	brain
19	chr6:147571400-147599200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:147571400-147599400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:147572400-147590000	Weak transcription	Primary T cells from cord blood	blood
22	chr6:147572600-147584200	Weak transcription	NHDF-Ad	bronchial
23	chr6:147572600-147588400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:147572600-147588400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:147572600-147605800	Weak transcription	Brain Anterior Caudate	brain
26	chr6:147572600-147609600	Weak transcription	Thymus	Thymus
27	chr6:147572600-147610200	Weak transcription	Esophagus	oesophagus
28	chr6:147572800-147584200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:147572800-147584600	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:147572800-147588400	Weak transcription	Liver	Liver
31	chr6:147572800-147599000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:147572800-147605800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:147572800-147617000	Weak transcription	Right Ventricle	heart
34	chr6:147573000-147584600	Weak transcription	HSMM	muscle
35	chr6:147573000-147585200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:147573000-147586800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:147573000-147586800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:147573000-147588000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr6:147573000-147589600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:147573000-147594200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:147573000-147599200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:147573000-147599800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:147573000-147599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:147573000-147616600	Weak transcription	Ovary	ovary
45	chr6:147573000-147616800	Weak transcription	Aorta	Aorta
46	chr6:147573200-147584600	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr6:147573200-147584600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:147573200-147584600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:147573200-147584600	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr6:147573200-147585400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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