Variant report

Variant	rs9497721
Chromosome Location	chr6:147512089-147512090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10440889	0.82[AFR][1000 genomes]
rs11961162	0.94[AFR][1000 genomes]
rs11963479	0.94[AFR][1000 genomes]
rs60712264	0.88[AFR][1000 genomes]
rs6926790	0.82[AFR][1000 genomes]
rs6927420	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9485139	0.88[AFR][1000 genomes]
rs9485152	1.00[AFR][1000 genomes]
rs9485154	0.94[AFR][1000 genomes]
rs9485162	0.82[AFR][1000 genomes]
rs9497688	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9497699	0.88[AFR][1000 genomes]
rs9497700	0.88[AFR][1000 genomes]
rs9497701	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9497722	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9497726	0.88[AFR][1000 genomes]
rs9497728	0.94[AFR][1000 genomes]
rs9497730	0.82[AFR][1000 genomes]
rs9497731	0.94[AFR][1000 genomes]
rs9497734	0.94[AFR][1000 genomes]
rs9497741	0.94[AFR][1000 genomes]
rs9497743	1.00[AFR][1000 genomes]
rs9497751	0.88[AFR][1000 genomes]
rs9497754	0.88[AFR][1000 genomes]
rs9497765	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147501200-147512600	Weak transcription	K562	blood
2	chr6:147508000-147517800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:147511400-147512200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:147511400-147514600	Enhancers	Liver	Liver
5	chr6:147511800-147512200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:147511800-147513200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:147512000-147513200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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