Variant report

Variant	rs9497688
Chromosome Location	chr6:147377556-147377557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11961162	0.94[AFR][1000 genomes]
rs11963479	0.94[AFR][1000 genomes]
rs9485139	1.00[AFR][1000 genomes]
rs9485152	0.88[AFR][1000 genomes]
rs9485154	0.94[AFR][1000 genomes]
rs9497699	1.00[AFR][1000 genomes]
rs9497700	1.00[AFR][1000 genomes]
rs9497701	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9497721	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9497722	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9497726	0.88[AFR][1000 genomes]
rs9497728	0.94[AFR][1000 genomes]
rs9497730	0.82[AFR][1000 genomes]
rs9497731	0.94[AFR][1000 genomes]
rs9497734	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147373200-147377600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:147375400-147380000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:147375600-147380000	Weak transcription	HepG2	liver
4	chr6:147375600-147384400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:147375800-147377600	Enhancers	Fetal Brain Male	brain
6	chr6:147376000-147377600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:147376200-147377800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:147376800-147377600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:147377000-147377600	Enhancers	Fetal Brain Female	brain
10	chr6:147377200-147381800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:147377400-147377600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr6:147377400-147381600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:147377400-147385000	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links