Variant report

Variant	rs9485139
Chromosome Location	chr6:147392573-147392574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11961162	0.94[AFR][1000 genomes]
rs11963479	0.94[AFR][1000 genomes]
rs9485152	0.88[AFR][1000 genomes]
rs9485154	0.94[AFR][1000 genomes]
rs9485162	0.82[AFR][1000 genomes]
rs9497688	1.00[AFR][1000 genomes]
rs9497699	1.00[AFR][1000 genomes]
rs9497700	1.00[AFR][1000 genomes]
rs9497701	1.00[AFR][1000 genomes]
rs9497721	0.88[AFR][1000 genomes]
rs9497722	0.88[AFR][1000 genomes]
rs9497726	0.88[AFR][1000 genomes]
rs9497728	0.94[AFR][1000 genomes]
rs9497730	0.82[AFR][1000 genomes]
rs9497731	0.94[AFR][1000 genomes]
rs9497734	0.94[AFR][1000 genomes]
rs9497741	0.94[AFR][1000 genomes]
rs9497743	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv823856	chr6:147384260-147393263	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147387000-147396600	Weak transcription	Brain Anterior Caudate	brain
2	chr6:147391200-147398400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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