Variant report

Variant	rs6975107
Chromosome Location	chr7:120380907-120380908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120380508..120383141-chr7:121034892..121036653,2	K562	blood:
2	chr7:120380461..120382564-chr7:120588648..120590998,2	K562	blood:

Variant related genes	Relation type
ENSG00000196937	Chromatin interaction
ENSG00000071243	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10249122	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10256978	0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10266090	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10279162	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505949	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12539187	0.85[YRI][hapmap];0.90[AMR][1000 genomes]
rs28362032	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58017683	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs60357079	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6975419	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7792191	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7802580	0.90[AMR][1000 genomes]
rs7807447	1.00[ASW][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.93[MKK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120373200-120382400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120378800-120382200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:120379000-120381600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:120379400-120381400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:120379400-120382400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:120379600-120381800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:120379600-120382200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:120379800-120381600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:120380000-120382200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:120380200-120383400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:120380400-120381000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:120380400-120381000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:120380400-120381000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
14	chr7:120380400-120381000	Active TSS	Right Atrium	heart
15	chr7:120380400-120381000	Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr7:120380400-120381000	Active TSS	Stomach Smooth Muscle	stomach
17	chr7:120380400-120381200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:120380400-120381200	Active TSS	Adipose Nuclei	Adipose
19	chr7:120380400-120381800	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr7:120380400-120382400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:120380600-120381000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr7:120380600-120381000	Active TSS	Muscle Satellite Cultured Cells	--
23	chr7:120380600-120381000	Active TSS	Brain Anterior Caudate	brain
24	chr7:120380600-120381000	Active TSS	Brain Cingulate Gyrus	brain
25	chr7:120380600-120381000	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr7:120380600-120381000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:120380600-120381000	Active TSS	Colon Smooth Muscle	Colon
28	chr7:120380600-120381000	Active TSS	Duodenum Mucosa	Duodenum
29	chr7:120380600-120381000	Active TSS	Ovary	ovary
30	chr7:120380600-120381000	Active TSS	Psoas Muscle	Psoas
31	chr7:120380600-120381000	Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr7:120380600-120381000	Active TSS	HUVEC	blood vessel
33	chr7:120380600-120381000	Active TSS	NH-A	brain
34	chr7:120380600-120381000	Active TSS	NHLF	lung
35	chr7:120380600-120381400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:120380600-120381600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:120380600-120383800	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr7:120380800-120381000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:120380800-120381000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:120380800-120381000	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr7:120380800-120381000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr7:120380800-120381000	Active TSS	Rectal Smooth Muscle	rectum
43	chr7:120380800-120381000	Active TSS	K562	blood
44	chr7:120380800-120381200	Active TSS	Liver	Liver

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