Variant report

Variant	rs6975419
Chromosome Location	chr7:120381112-120381113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120380508..120383141-chr7:121034892..121036653,2	K562	blood:
2	chr7:120380461..120382564-chr7:120588648..120590998,2	K562	blood:

Variant related genes	Relation type
ENSG00000071243	Chromatin interaction
ENSG00000196937	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10249122	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10266090	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279162	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11505949	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12539187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28362032	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58017683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60357079	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6975107	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7792191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7802580	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7807447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120373200-120382400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120378800-120382200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:120379000-120381600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:120379400-120381400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:120379400-120382400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:120379600-120381800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:120379600-120382200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:120379800-120381600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:120380000-120382200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:120380200-120383400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:120380400-120381200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:120380400-120381200	Active TSS	Adipose Nuclei	Adipose
13	chr7:120380400-120381800	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr7:120380400-120382400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:120380600-120381400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:120380600-120381600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:120380600-120383800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:120380800-120381200	Active TSS	Liver	Liver
19	chr7:120381000-120381800	Weak transcription	Colon Smooth Muscle	Colon
20	chr7:120381000-120382200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:120381000-120382200	Weak transcription	Brain Hippocampus Middle	brain
22	chr7:120381000-120382200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:120381000-120382600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:120381000-120382600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr7:120381000-120383200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:120381000-120383400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:120381000-120385800	Weak transcription	Ovary	ovary
28	chr7:120381000-120387000	Weak transcription	Right Atrium	heart

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