Variant report

Variant	rs7045126
Chromosome Location	chr9:86568874-86568875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86534503..86538702-chr9:86568820..86574555,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165115	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10114889	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10115699	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10125715	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10868068	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10868070	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10868071	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10868076	0.92[ASN][1000 genomes]
rs10868080	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11140289	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13290882	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13295313	0.81[EUR][1000 genomes]
rs13296528	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1831757	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1889113	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1982151	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2576362	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2780103	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28521174	0.81[EUR][1000 genomes]
rs296883	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs296887	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296888	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296889	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296890	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296893	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3818725	0.81[ASN][1000 genomes]
rs4147132	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147133	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4535826	0.97[ASN][1000 genomes]
rs6559751	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559752	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs696825	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7020300	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033292	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7853254	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs796003	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs796004	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs796007	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs963459	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	esv3366490	chr9:86541369-86608868	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
8	nsv1043703	chr9:86545917-86603545	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86536600-86571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:86543000-86571000	Weak transcription	Esophagus	oesophagus
3	chr9:86547200-86570200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr9:86549000-86570200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:86550200-86570400	Weak transcription	Aorta	Aorta
6	chr9:86550400-86569200	Weak transcription	Fetal Heart	heart
7	chr9:86550400-86570400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:86550600-86569000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:86550800-86570400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:86551000-86570400	Weak transcription	Stomach Mucosa	stomach
11	chr9:86551000-86570400	Weak transcription	NH-A	brain
12	chr9:86551600-86570000	Weak transcription	Fetal Brain Male	brain
13	chr9:86551600-86570200	Weak transcription	NHEK	skin
14	chr9:86552000-86570400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:86552000-86570400	Weak transcription	Spleen	Spleen
16	chr9:86553000-86570400	Weak transcription	Colonic Mucosa	Colon
17	chr9:86553600-86570000	Strong transcription	Fetal Stomach	stomach
18	chr9:86553800-86569800	Weak transcription	Hela-S3	cervix
19	chr9:86554400-86570400	Weak transcription	Psoas Muscle	Psoas
20	chr9:86554600-86570200	Weak transcription	Brain Substantia Nigra	brain
21	chr9:86554800-86570400	Weak transcription	Pancreas	Pancrea
22	chr9:86554800-86570600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:86555400-86570200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr9:86555600-86570200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr9:86556000-86570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:86556000-86571000	Weak transcription	Gastric	stomach
27	chr9:86556200-86570400	Weak transcription	HSMMtube	muscle
28	chr9:86557000-86571000	Weak transcription	Lung	lung
29	chr9:86557400-86570000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr9:86557400-86570400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr9:86557600-86570200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr9:86557800-86570400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:86557800-86570400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:86558000-86570000	Weak transcription	Dnd41	blood
35	chr9:86558000-86570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:86558000-86570200	Weak transcription	Brain Hippocampus Middle	brain
37	chr9:86558000-86570400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr9:86558000-86571000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr9:86558400-86570200	Weak transcription	Primary T cells from cord blood	blood
40	chr9:86558600-86570200	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr9:86558600-86570200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr9:86558600-86570400	Weak transcription	Brain Angular Gyrus	brain
43	chr9:86559200-86570000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr9:86559400-86570200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr9:86559400-86570200	Weak transcription	Fetal Brain Female	brain
46	chr9:86559800-86570200	Weak transcription	Primary B cells from cord blood	blood
47	chr9:86559800-86570200	Weak transcription	NHDF-Ad	bronchial
48	chr9:86560000-86570000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr9:86560000-86570200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr9:86560000-86570200	Weak transcription	Rectal Mucosa Donor 29	rectum

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