Variant report

Variant	rs7077779
Chromosome Location	chr10:19528830-19528831
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10827129	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10827157	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10827171	0.91[EUR][1000 genomes]
rs10827172	0.91[EUR][1000 genomes]
rs11009138	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11009170	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11009171	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11009193	0.91[EUR][1000 genomes]
rs11813644	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11814631	0.84[EUR][1000 genomes]
rs12245135	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12247476	0.87[EUR][1000 genomes]
rs12251479	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12253171	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12255631	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12255706	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12256606	0.87[EUR][1000 genomes]
rs12259409	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12259609	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12261636	0.95[EUR][1000 genomes]
rs12263470	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12265635	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1582060	0.89[EUR][1000 genomes]
rs1591338	0.93[EUR][1000 genomes]
rs28733910	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28795383	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28838873	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57747265	0.84[EUR][1000 genomes]
rs59559193	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59814509	0.84[EUR][1000 genomes]
rs7072833	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7073127	0.98[EUR][1000 genomes]
rs7074336	0.91[EUR][1000 genomes]
rs7076451	0.84[EUR][1000 genomes]
rs7081115	0.82[EUR][1000 genomes]
rs7088666	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7089719	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7090041	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7091044	0.98[EUR][1000 genomes]
rs7093441	0.91[EUR][1000 genomes]
rs74118852	0.82[EUR][1000 genomes]
rs74118853	0.82[EUR][1000 genomes]
rs7923099	0.93[EUR][1000 genomes]
rs9299699	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv466764	chr10:19400845-19979434	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv550128	chr10:19400845-19979434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2750885	chr10:19407891-19836364	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1043780	chr10:19415575-19827284	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1035870	chr10:19415575-19832047	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv550129	chr10:19417181-19834795	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1035591	chr10:19417883-19823164	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv540506	chr10:19417883-19823164	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2750886	chr10:19432774-19832094	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv831802	chr10:19449261-19585888	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv428552	chr10:19457788-19623823	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1047513	chr10:19461947-19810770	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv540507	chr10:19461947-19810770	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv947757	chr10:19500880-19533128	Strong transcription Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv550130	chr10:19512035-19540391	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv948249	chr10:19512325-19533128	Strong transcription Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv550131	chr10:19514636-19540391	ZNF genes & repeats Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv894919	chr10:19514636-19758398	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv1049003	chr10:19516190-19538815	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1038657	chr10:19516190-19540391	ZNF genes & repeats Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv430134	chr10:19516264-19540394	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv894920	chr10:19520750-19592466	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19504000-19546600	Weak transcription	Duodenum Mucosa	Duodenum

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