Variant report

Variant	rs7082100
Chromosome Location	chr10:116531240-116531241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116529761..116532511-chr10:116581268..116583823,3	MCF-7	breast:
2	chr10:116520053..116522860-chr10:116528096..116531529,3	K562	blood:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1007847	1.00[EUR][1000 genomes]
rs11196974	1.00[EUR][1000 genomes]
rs5023856	1.00[EUR][1000 genomes]
rs55954958	1.00[EUR][1000 genomes]
rs55993822	1.00[EUR][1000 genomes]
rs56044402	1.00[EUR][1000 genomes]
rs57000201	1.00[EUR][1000 genomes]
rs57707843	1.00[EUR][1000 genomes]
rs58836644	1.00[EUR][1000 genomes]
rs59741104	1.00[EUR][1000 genomes]
rs60460075	1.00[EUR][1000 genomes]
rs60791428	1.00[EUR][1000 genomes]
rs62641708	1.00[EUR][1000 genomes]
rs7069069	1.00[EUR][1000 genomes]
rs7077957	1.00[EUR][1000 genomes]
rs7078359	1.00[EUR][1000 genomes]
rs7084277	1.00[EUR][1000 genomes]
rs73371850	1.00[EUR][1000 genomes]
rs73371851	1.00[EUR][1000 genomes]
rs74158064	1.00[EUR][1000 genomes]
rs74158066	1.00[EUR][1000 genomes]
rs74158068	1.00[EUR][1000 genomes]
rs74158070	1.00[EUR][1000 genomes]
rs74158071	1.00[EUR][1000 genomes]
rs74158072	1.00[EUR][1000 genomes]
rs74158073	1.00[EUR][1000 genomes]
rs74158075	1.00[EUR][1000 genomes]
rs74158076	1.00[EUR][1000 genomes]
rs74158079	1.00[EUR][1000 genomes]
rs74158081	1.00[EUR][1000 genomes]
rs74158090	1.00[EUR][1000 genomes]
rs74159814	1.00[EUR][1000 genomes]
rs74159822	1.00[EUR][1000 genomes]
rs74159823	1.00[EUR][1000 genomes]
rs74159827	1.00[EUR][1000 genomes]
rs7894976	1.00[EUR][1000 genomes]
rs7899382	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv516803	chr10:116528294-116556846	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116528400-116531800	Weak transcription	HUVEC	blood vessel
2	chr10:116528400-116531800	Weak transcription	NH-A	brain
3	chr10:116528600-116539600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:116528600-116540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:116528800-116531800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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