Variant report

Variant	rs60460075
Chromosome Location	chr10:116586247-116586248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116524589..116526478-chr10:116585947..116587960,2	K562	blood:
2	chr10:116585905..116588338-chr10:116602165..116603974,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1007847	1.00[EUR][1000 genomes]
rs11196974	1.00[EUR][1000 genomes]
rs11197025	1.00[EUR][1000 genomes]
rs11816826	1.00[ASN][1000 genomes]
rs11817330	1.00[ASN][1000 genomes]
rs11817337	1.00[ASN][1000 genomes]
rs1413196	1.00[ASN][1000 genomes]
rs17092260	1.00[ASN][1000 genomes]
rs17092288	1.00[ASN][1000 genomes]
rs17092299	1.00[ASN][1000 genomes]
rs17092337	1.00[ASN][1000 genomes]
rs5023856	1.00[EUR][1000 genomes]
rs55954958	1.00[EUR][1000 genomes]
rs55993822	1.00[EUR][1000 genomes]
rs56044402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56866557	1.00[EUR][1000 genomes]
rs57000201	1.00[EUR][1000 genomes]
rs57707843	1.00[EUR][1000 genomes]
rs58042685	1.00[EUR][1000 genomes]
rs58836644	1.00[EUR][1000 genomes]
rs59738549	1.00[ASN][1000 genomes]
rs59741104	1.00[EUR][1000 genomes]
rs60791428	1.00[EUR][1000 genomes]
rs60870849	1.00[ASN][1000 genomes]
rs61669564	1.00[ASN][1000 genomes]
rs61867917	1.00[ASN][1000 genomes]
rs61867918	1.00[ASN][1000 genomes]
rs61867919	1.00[ASN][1000 genomes]
rs61867923	1.00[ASN][1000 genomes]
rs61867924	1.00[ASN][1000 genomes]
rs61867925	1.00[ASN][1000 genomes]
rs61867929	1.00[ASN][1000 genomes]
rs61867933	1.00[ASN][1000 genomes]
rs61869065	1.00[ASN][1000 genomes]
rs61869066	1.00[ASN][1000 genomes]
rs61869068	1.00[ASN][1000 genomes]
rs61869069	1.00[ASN][1000 genomes]
rs61869071	1.00[ASN][1000 genomes]
rs62641708	1.00[EUR][1000 genomes]
rs7069069	1.00[EUR][1000 genomes]
rs7070890	1.00[ASN][1000 genomes]
rs7077957	1.00[EUR][1000 genomes]
rs7078359	1.00[EUR][1000 genomes]
rs7082100	1.00[EUR][1000 genomes]
rs7084277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73363911	1.00[ASN][1000 genomes]
rs73371850	1.00[EUR][1000 genomes]
rs73371851	1.00[EUR][1000 genomes]
rs74158064	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158066	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158075	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158076	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158079	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158083	1.00[ASN][1000 genomes]
rs74158090	1.00[EUR][1000 genomes]
rs74159814	1.00[EUR][1000 genomes]
rs74159822	1.00[EUR][1000 genomes]
rs74159823	1.00[EUR][1000 genomes]
rs74159827	1.00[EUR][1000 genomes]
rs7894976	1.00[EUR][1000 genomes]
rs7899382	1.00[EUR][1000 genomes]
rs7915853	1.00[ASN][1000 genomes]
rs9421195	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116582600-116589000	Weak transcription	Gastric	stomach
2	chr10:116582600-116589400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116582600-116596800	Weak transcription	Lung	lung
4	chr10:116582600-116597000	Weak transcription	Spleen	Spleen
5	chr10:116582800-116589000	Weak transcription	Right Ventricle	heart
6	chr10:116582800-116593000	Weak transcription	Colonic Mucosa	Colon
7	chr10:116582800-116604400	Weak transcription	Esophagus	oesophagus
8	chr10:116583000-116586800	Enhancers	Placenta	Placenta
9	chr10:116583000-116589400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:116583000-116593200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:116583000-116594800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:116583000-116596200	Weak transcription	Brain Substantia Nigra	brain
13	chr10:116583000-116617600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:116583200-116586400	Enhancers	Hela-S3	cervix
15	chr10:116583200-116586600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr10:116583200-116587000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr10:116583200-116587400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:116583200-116587400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:116583200-116587600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:116583200-116587800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:116583200-116587800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:116583200-116588000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:116583200-116590600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:116583200-116591000	Weak transcription	Fetal Intestine Large	intestine
25	chr10:116583200-116592800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:116583200-116594000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:116583200-116616800	Weak transcription	K562	blood
28	chr10:116583400-116592400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:116583600-116586400	Flanking Active TSS	GM12878-XiMat	blood
30	chr10:116583600-116591000	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:116583600-116591600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:116583800-116586400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:116583800-116586600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr10:116583800-116586600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:116583800-116586600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr10:116583800-116587000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr10:116583800-116590600	Weak transcription	Primary B cells from cord blood	blood
38	chr10:116583800-116601600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:116584000-116586600	Enhancers	HMEC	breast
40	chr10:116584000-116591000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr10:116584200-116586400	Enhancers	Adipose Nuclei	Adipose
42	chr10:116584200-116587800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:116584200-116589400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr10:116584200-116593000	Weak transcription	Thymus	Thymus
45	chr10:116584200-116593400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:116584400-116586400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:116584400-116586400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:116584400-116586600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:116584400-116587000	Enhancers	NHLF	lung
50	chr10:116584400-116590800	Weak transcription	Monocytes-CD14+_RO01746	blood

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