Variant report

Variant	rs61867917
Chromosome Location	chr10:116384447-116384448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116310031..116311847-chr10:116382346..116385171,2	MCF-7	breast:
2	chr10:116359202..116360862-chr10:116383817..116385485,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11814078	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816826	1.00[ASN][1000 genomes]
rs11817330	1.00[ASN][1000 genomes]
rs11817337	1.00[ASN][1000 genomes]
rs1413196	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17092260	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092288	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092299	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092337	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2483589	1.00[ASN][1000 genomes]
rs2497666	1.00[ASN][1000 genomes]
rs2497667	1.00[ASN][1000 genomes]
rs59738549	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60460075	1.00[ASN][1000 genomes]
rs60870849	1.00[ASN][1000 genomes]
rs61669564	1.00[ASN][1000 genomes]
rs61867889	1.00[ASN][1000 genomes]
rs61867916	0.96[EUR][1000 genomes]
rs61867918	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867919	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867923	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867924	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867925	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867929	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867933	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869065	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869066	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869068	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869069	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869071	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070890	1.00[ASN][1000 genomes]
rs7084277	1.00[ASN][1000 genomes]
rs73363911	1.00[ASN][1000 genomes]
rs74158064	1.00[ASN][1000 genomes]
rs74158066	1.00[ASN][1000 genomes]
rs74158068	1.00[ASN][1000 genomes]
rs7914325	1.00[ASN][1000 genomes]
rs7915853	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9421195	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116378200-116385000	Enhancers	Right Atrium	heart
2	chr10:116378800-116391200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:116381200-116385000	Enhancers	Left Ventricle	heart
4	chr10:116381400-116385200	Enhancers	Stomach Mucosa	stomach
5	chr10:116382000-116385000	Weak transcription	Right Ventricle	heart
6	chr10:116382000-116385600	Enhancers	HepG2	liver
7	chr10:116382200-116385000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:116382400-116384600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:116382400-116385400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:116382400-116385600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr10:116382400-116387400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:116382400-116387600	Enhancers	HMEC	breast
13	chr10:116382400-116387800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:116382400-116388000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:116382600-116385000	Enhancers	HUVEC	blood vessel
16	chr10:116382600-116385200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:116382600-116385400	Enhancers	HSMMtube	muscle
18	chr10:116382600-116387200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:116382600-116387600	Enhancers	NHEK	skin
20	chr10:116382800-116385200	Enhancers	Osteobl	bone
21	chr10:116383000-116384600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr10:116383000-116385200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:116383000-116385200	Enhancers	NHDF-Ad	bronchial
24	chr10:116383000-116385400	Enhancers	NH-A	brain
25	chr10:116383200-116391200	Weak transcription	Lung	lung
26	chr10:116383400-116385400	Enhancers	HSMM	muscle
27	chr10:116383400-116388800	Weak transcription	Fetal Intestine Large	intestine
28	chr10:116383800-116384600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:116383800-116386400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:116384000-116384600	Enhancers	Pancreas	Pancrea
31	chr10:116384000-116385000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr10:116384000-116386200	Weak transcription	Adipose Nuclei	Adipose
33	chr10:116384000-116388800	Weak transcription	Psoas Muscle	Psoas
34	chr10:116384000-116391000	Weak transcription	Fetal Intestine Small	intestine
35	chr10:116384200-116385000	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr10:116384200-116385600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:116384200-116385600	Enhancers	Hela-S3	cervix
38	chr10:116384200-116386600	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:116384200-116390800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:116384400-116384600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:116384400-116384800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr10:116384400-116384800	Enhancers	A549	lung
43	chr10:116384400-116385400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr10:116384400-116385400	Strong transcription	Fetal Heart	heart
45	chr10:116384400-116385800	Weak transcription	Gastric	stomach
46	chr10:116384400-116388600	Weak transcription	Liver	Liver
47	chr10:116384400-116389200	Weak transcription	Esophagus	oesophagus
48	chr10:116384400-116389600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:116384400-116390200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:116384400-116390400	Weak transcription	Stomach Smooth Muscle	stomach

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