Variant report

Variant	rs74158068
Chromosome Location	chr10:116585629-116585630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1007847	1.00[EUR][1000 genomes]
rs11196974	1.00[EUR][1000 genomes]
rs11197025	1.00[EUR][1000 genomes]
rs11816826	1.00[ASN][1000 genomes]
rs11817330	1.00[ASN][1000 genomes]
rs11817337	1.00[ASN][1000 genomes]
rs1413196	1.00[ASN][1000 genomes]
rs17092260	1.00[ASN][1000 genomes]
rs17092288	1.00[ASN][1000 genomes]
rs17092299	1.00[ASN][1000 genomes]
rs17092337	1.00[ASN][1000 genomes]
rs5023856	1.00[EUR][1000 genomes]
rs55954958	1.00[EUR][1000 genomes]
rs55993822	1.00[EUR][1000 genomes]
rs56044402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56866557	1.00[EUR][1000 genomes]
rs57000201	1.00[EUR][1000 genomes]
rs57707843	1.00[EUR][1000 genomes]
rs58042685	1.00[EUR][1000 genomes]
rs58836644	1.00[EUR][1000 genomes]
rs59738549	1.00[ASN][1000 genomes]
rs59741104	1.00[EUR][1000 genomes]
rs60460075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60791428	1.00[EUR][1000 genomes]
rs60870849	1.00[ASN][1000 genomes]
rs61669564	1.00[ASN][1000 genomes]
rs61867917	1.00[ASN][1000 genomes]
rs61867918	1.00[ASN][1000 genomes]
rs61867919	1.00[ASN][1000 genomes]
rs61867923	1.00[ASN][1000 genomes]
rs61867924	1.00[ASN][1000 genomes]
rs61867925	1.00[ASN][1000 genomes]
rs61867929	1.00[ASN][1000 genomes]
rs61867933	1.00[ASN][1000 genomes]
rs61869065	1.00[ASN][1000 genomes]
rs61869066	1.00[ASN][1000 genomes]
rs61869068	1.00[ASN][1000 genomes]
rs61869069	1.00[ASN][1000 genomes]
rs61869071	1.00[ASN][1000 genomes]
rs62641708	1.00[EUR][1000 genomes]
rs7069069	1.00[EUR][1000 genomes]
rs7070890	1.00[ASN][1000 genomes]
rs7077957	1.00[EUR][1000 genomes]
rs7078359	1.00[EUR][1000 genomes]
rs7082100	1.00[EUR][1000 genomes]
rs7084277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73363911	1.00[ASN][1000 genomes]
rs73371850	1.00[EUR][1000 genomes]
rs73371851	1.00[EUR][1000 genomes]
rs74158064	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158066	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158075	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158076	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158079	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158083	1.00[ASN][1000 genomes]
rs74158090	1.00[EUR][1000 genomes]
rs74159814	1.00[EUR][1000 genomes]
rs74159822	1.00[EUR][1000 genomes]
rs74159823	1.00[EUR][1000 genomes]
rs74159827	1.00[EUR][1000 genomes]
rs7894976	1.00[EUR][1000 genomes]
rs7899382	1.00[EUR][1000 genomes]
rs7915853	1.00[ASN][1000 genomes]
rs9421195	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116582600-116585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:116582600-116589000	Weak transcription	Gastric	stomach
3	chr10:116582600-116589400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:116582600-116596800	Weak transcription	Lung	lung
5	chr10:116582600-116597000	Weak transcription	Spleen	Spleen
6	chr10:116582800-116585800	Weak transcription	Left Ventricle	heart
7	chr10:116582800-116589000	Weak transcription	Right Ventricle	heart
8	chr10:116582800-116593000	Weak transcription	Colonic Mucosa	Colon
9	chr10:116582800-116604400	Weak transcription	Esophagus	oesophagus
10	chr10:116583000-116586000	Enhancers	Fetal Heart	heart
11	chr10:116583000-116586200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:116583000-116586800	Enhancers	Placenta	Placenta
13	chr10:116583000-116589400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:116583000-116593200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:116583000-116594800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:116583000-116596200	Weak transcription	Brain Substantia Nigra	brain
17	chr10:116583000-116617600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:116583200-116586000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:116583200-116586200	Enhancers	Liver	Liver
20	chr10:116583200-116586400	Enhancers	Hela-S3	cervix
21	chr10:116583200-116586600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:116583200-116587000	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr10:116583200-116587400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:116583200-116587400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr10:116583200-116587600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:116583200-116587800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:116583200-116587800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:116583200-116588000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:116583200-116590600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:116583200-116591000	Weak transcription	Fetal Intestine Large	intestine
31	chr10:116583200-116592800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:116583200-116594000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:116583200-116616800	Weak transcription	K562	blood
34	chr10:116583400-116585800	Enhancers	Brain Germinal Matrix	brain
35	chr10:116583400-116586000	Enhancers	HepG2	liver
36	chr10:116583400-116592400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:116583600-116585800	Flanking Active TSS	NHEK	skin
38	chr10:116583600-116586000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:116583600-116586200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:116583600-116586400	Flanking Active TSS	GM12878-XiMat	blood
41	chr10:116583600-116591000	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:116583600-116591600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:116583800-116586000	Genic enhancers	Dnd41	blood
44	chr10:116583800-116586400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:116583800-116586600	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr10:116583800-116586600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:116583800-116586600	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr10:116583800-116587000	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr10:116583800-116590600	Weak transcription	Primary B cells from cord blood	blood
50	chr10:116583800-116601600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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