Variant report

Variant	rs74158083
Chromosome Location	chr10:116637551-116637552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116635157..116638193-chr10:116696471..116698636,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165832	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11816826	1.00[ASN][1000 genomes]
rs11817330	1.00[ASN][1000 genomes]
rs11817337	1.00[ASN][1000 genomes]
rs1413196	1.00[ASN][1000 genomes]
rs17092260	1.00[ASN][1000 genomes]
rs17092288	1.00[ASN][1000 genomes]
rs17092299	1.00[ASN][1000 genomes]
rs17092337	1.00[ASN][1000 genomes]
rs56044402	1.00[ASN][1000 genomes]
rs60460075	1.00[ASN][1000 genomes]
rs61669564	1.00[ASN][1000 genomes]
rs61869068	1.00[ASN][1000 genomes]
rs61869069	1.00[ASN][1000 genomes]
rs61869071	1.00[ASN][1000 genomes]
rs7070890	1.00[ASN][1000 genomes]
rs7084277	1.00[ASN][1000 genomes]
rs73363911	1.00[ASN][1000 genomes]
rs74158064	1.00[ASN][1000 genomes]
rs74158066	1.00[ASN][1000 genomes]
rs74158068	1.00[ASN][1000 genomes]
rs74158070	1.00[ASN][1000 genomes]
rs74158071	1.00[ASN][1000 genomes]
rs74158072	1.00[ASN][1000 genomes]
rs74158073	1.00[ASN][1000 genomes]
rs74158075	1.00[ASN][1000 genomes]
rs74158076	1.00[ASN][1000 genomes]
rs74158079	1.00[ASN][1000 genomes]
rs74158081	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv831996	chr10:116601552-116772968	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116589600-116640600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:116609600-116639400	Weak transcription	Pancreas	Pancrea
3	chr10:116611600-116641000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:116617400-116640600	Weak transcription	Fetal Intestine Small	intestine
5	chr10:116619400-116641600	Weak transcription	Aorta	Aorta
6	chr10:116621800-116639600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:116621800-116639600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:116622000-116639200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:116622200-116639000	Weak transcription	A549	lung
10	chr10:116624400-116639200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:116631400-116639000	Weak transcription	NHDF-Ad	bronchial
12	chr10:116635200-116639000	Weak transcription	Osteobl	bone
13	chr10:116635200-116639200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:116635200-116639200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:116635200-116639200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:116635200-116639400	Weak transcription	Fetal Kidney	kidney
17	chr10:116635200-116639600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:116635200-116640600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:116635400-116639200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:116636600-116637600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:116636800-116639000	Weak transcription	Liver	Liver
22	chr10:116636800-116641800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:116637000-116638800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:116637000-116638800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:116637000-116638800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:116637000-116639000	Weak transcription	Adipose Nuclei	Adipose
27	chr10:116637000-116639000	Weak transcription	Fetal Lung	lung
28	chr10:116637000-116639000	Weak transcription	Hela-S3	cervix
29	chr10:116637000-116639200	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr10:116637000-116639200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr10:116637000-116639200	Weak transcription	Brain Angular Gyrus	brain
32	chr10:116637000-116639200	Weak transcription	Brain Anterior Caudate	brain
33	chr10:116637000-116639200	Weak transcription	HepG2	liver
34	chr10:116637000-116639200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr10:116637000-116639400	Weak transcription	Fetal Stomach	stomach
36	chr10:116637000-116639800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:116637000-116639800	Weak transcription	Ovary	ovary
38	chr10:116637000-116640400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:116637000-116640400	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:116637000-116641200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr10:116637000-116641400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:116637000-116641400	Weak transcription	Stomach Mucosa	stomach
43	chr10:116637000-116641400	Weak transcription	HSMMtube	muscle
44	chr10:116637000-116641600	Weak transcription	NHEK	skin
45	chr10:116637000-116641800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:116637000-116641800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:116637000-116641800	Weak transcription	NH-A	brain
48	chr10:116637000-116642200	Weak transcription	HMEC	breast
49	chr10:116637200-116638800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:116637200-116639000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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