Variant report

Variant	rs74158066
Chromosome Location	chr10:116582674-116582675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116567584..116574580-chr10:116575101..116583231,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215760	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1007847	1.00[EUR][1000 genomes]
rs11196974	1.00[EUR][1000 genomes]
rs11197025	1.00[EUR][1000 genomes]
rs11816826	1.00[ASN][1000 genomes]
rs11817330	1.00[ASN][1000 genomes]
rs11817337	1.00[ASN][1000 genomes]
rs1413196	1.00[ASN][1000 genomes]
rs17092260	1.00[ASN][1000 genomes]
rs17092288	1.00[ASN][1000 genomes]
rs17092299	1.00[ASN][1000 genomes]
rs17092337	1.00[ASN][1000 genomes]
rs5023856	1.00[EUR][1000 genomes]
rs55845490	0.83[AMR][1000 genomes]
rs55954958	1.00[EUR][1000 genomes]
rs55993822	1.00[EUR][1000 genomes]
rs56044402	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56866557	1.00[EUR][1000 genomes]
rs57000201	1.00[EUR][1000 genomes]
rs57707843	1.00[EUR][1000 genomes]
rs58042685	1.00[EUR][1000 genomes]
rs58836644	1.00[EUR][1000 genomes]
rs59738549	1.00[ASN][1000 genomes]
rs59741104	1.00[EUR][1000 genomes]
rs60460075	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60791428	1.00[EUR][1000 genomes]
rs60870849	1.00[ASN][1000 genomes]
rs61669564	1.00[ASN][1000 genomes]
rs61867917	1.00[ASN][1000 genomes]
rs61867918	1.00[ASN][1000 genomes]
rs61867919	1.00[ASN][1000 genomes]
rs61867923	1.00[ASN][1000 genomes]
rs61867924	1.00[ASN][1000 genomes]
rs61867925	1.00[ASN][1000 genomes]
rs61867929	1.00[ASN][1000 genomes]
rs61867933	1.00[ASN][1000 genomes]
rs61869065	1.00[ASN][1000 genomes]
rs61869066	1.00[ASN][1000 genomes]
rs61869068	1.00[ASN][1000 genomes]
rs61869069	1.00[ASN][1000 genomes]
rs61869071	1.00[ASN][1000 genomes]
rs62641708	1.00[EUR][1000 genomes]
rs7069069	1.00[EUR][1000 genomes]
rs7070890	1.00[ASN][1000 genomes]
rs7077957	1.00[EUR][1000 genomes]
rs7078359	1.00[EUR][1000 genomes]
rs7082100	1.00[EUR][1000 genomes]
rs7084277	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73363911	1.00[ASN][1000 genomes]
rs73371850	1.00[EUR][1000 genomes]
rs73371851	1.00[EUR][1000 genomes]
rs74158064	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158068	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158070	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158071	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158072	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158073	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158075	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158076	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158079	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158081	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158083	1.00[ASN][1000 genomes]
rs74158090	1.00[EUR][1000 genomes]
rs74159814	1.00[EUR][1000 genomes]
rs74159822	1.00[EUR][1000 genomes]
rs74159823	1.00[EUR][1000 genomes]
rs74159827	1.00[EUR][1000 genomes]
rs7894976	1.00[EUR][1000 genomes]
rs7899382	1.00[EUR][1000 genomes]
rs7915853	1.00[ASN][1000 genomes]
rs9421195	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv3338822	chr10:116579462-116583960	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3407216	chr10:116580587-116583135	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3343755	chr10:116580762-116583210	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116579400-116583600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:116579800-116583600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:116580600-116582800	Active TSS	NHEK	skin
4	chr10:116580600-116583000	Active TSS	Placenta Amnion	Placenta Amnion
5	chr10:116580600-116583600	Active TSS	GM12878-XiMat	blood
6	chr10:116580600-116583800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:116580600-116584600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:116580800-116582800	Active TSS	Hela-S3	cervix
9	chr10:116580800-116583000	Active TSS	Brain Angular Gyrus	brain
10	chr10:116580800-116583200	Active TSS	A549	lung
11	chr10:116580800-116583400	Active TSS	NH-A	brain
12	chr10:116580800-116584200	Active TSS	NHLF	lung
13	chr10:116580800-116584600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:116581000-116582800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:116581000-116582800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:116581000-116582800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:116581000-116582800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr10:116581000-116582800	Active TSS	Fetal Brain Female	brain
19	chr10:116581000-116582800	Active TSS	Fetal Kidney	kidney
20	chr10:116581000-116583000	Active TSS	H1 Cell Line	embryonic stem cell
21	chr10:116581000-116583000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:116581000-116583000	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr10:116581000-116583000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:116581000-116583000	Active TSS	Brain Cingulate Gyrus	brain
25	chr10:116581000-116583000	Active TSS	Brain Hippocampus Middle	brain
26	chr10:116581000-116583000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:116581000-116583000	Active TSS	Brain Substantia Nigra	brain
28	chr10:116581000-116583000	Active TSS	Colon Smooth Muscle	Colon
29	chr10:116581000-116583000	Active TSS	Placenta	Placenta
30	chr10:116581000-116583000	Active TSS	Rectal Smooth Muscle	rectum
31	chr10:116581000-116583000	Active TSS	K562	blood
32	chr10:116581000-116583200	Active TSS	HUES6 Cell Line	embryonic stem cell
33	chr10:116581000-116583200	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr10:116581000-116583200	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr10:116581000-116583200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:116581000-116583200	Active TSS	Duodenum Mucosa	Duodenum
37	chr10:116581000-116583200	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr10:116581000-116583200	Active TSS	Fetal Intestine Large	intestine
39	chr10:116581000-116583200	Active TSS	Fetal Intestine Small	intestine
40	chr10:116581000-116583200	Active TSS	Fetal Lung	lung
41	chr10:116581000-116583200	Active TSS	Fetal Muscle Leg	muscle
42	chr10:116581000-116583200	Active TSS	Fetal Stomach	stomach
43	chr10:116581000-116583200	Active TSS	Ovary	ovary
44	chr10:116581000-116583200	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr10:116581000-116583200	Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr10:116581000-116583200	Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr10:116581000-116583200	Active TSS	Stomach Smooth Muscle	stomach
48	chr10:116581000-116583200	Active TSS	Thymus	Thymus
49	chr10:116581000-116583400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:116581000-116583600	Active TSS	HSMMtube	muscle

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