Variant report

Variant	rs59738549
Chromosome Location	chr10:116394226-116394227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116393656..116396167-chr10:116399745..116401375,2	K562	blood:
2	chr10:116381677..116383578-chr10:116393467..116395747,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11814078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816826	1.00[ASN][1000 genomes]
rs11817330	1.00[ASN][1000 genomes]
rs11817337	1.00[ASN][1000 genomes]
rs1413196	1.00[ASN][1000 genomes]
rs17092260	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092288	1.00[ASN][1000 genomes]
rs17092299	1.00[ASN][1000 genomes]
rs17092337	1.00[ASN][1000 genomes]
rs2483589	1.00[ASN][1000 genomes]
rs2497666	1.00[ASN][1000 genomes]
rs2497667	1.00[ASN][1000 genomes]
rs60460075	1.00[ASN][1000 genomes]
rs60870849	1.00[ASN][1000 genomes]
rs61669564	1.00[ASN][1000 genomes]
rs61867889	1.00[ASN][1000 genomes]
rs61867916	1.00[EUR][1000 genomes]
rs61867917	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867918	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867919	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867923	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867924	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867925	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867929	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867933	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869065	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869066	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869068	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869069	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869071	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070890	1.00[ASN][1000 genomes]
rs7084277	1.00[ASN][1000 genomes]
rs73363911	1.00[ASN][1000 genomes]
rs74158064	1.00[ASN][1000 genomes]
rs74158066	1.00[ASN][1000 genomes]
rs74158068	1.00[ASN][1000 genomes]
rs74158070	1.00[ASN][1000 genomes]
rs74158071	1.00[ASN][1000 genomes]
rs74158072	1.00[ASN][1000 genomes]
rs74158073	1.00[ASN][1000 genomes]
rs74158075	1.00[ASN][1000 genomes]
rs74158076	1.00[ASN][1000 genomes]
rs7914325	1.00[ASN][1000 genomes]
rs7915853	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9421195	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116391400-116395800	Weak transcription	Spleen	Spleen
2	chr10:116391800-116395200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr10:116392000-116395000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:116392200-116395000	Enhancers	Primary hematopoietic stem cells	blood
5	chr10:116392200-116395400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:116392200-116395400	Enhancers	HMEC	breast
7	chr10:116392200-116395400	Enhancers	NHEK	skin
8	chr10:116392200-116395800	Enhancers	Placenta	Placenta
9	chr10:116392400-116394600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:116392400-116395200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:116392400-116395200	Enhancers	HUVEC	blood vessel
12	chr10:116392400-116395400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:116392400-116395400	Enhancers	Fetal Lung	lung
14	chr10:116392400-116395600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr10:116392400-116396400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:116392800-116395800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:116392800-116396000	Enhancers	Adipose Nuclei	Adipose
18	chr10:116392800-116396200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:116392800-116396200	Enhancers	Fetal Muscle Leg	muscle
20	chr10:116392800-116399000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:116393000-116394600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:116393000-116395000	Weak transcription	Esophagus	oesophagus
23	chr10:116393000-116395200	Enhancers	Fetal Kidney	kidney
24	chr10:116393000-116395200	Weak transcription	Gastric	stomach
25	chr10:116393000-116395800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:116393000-116396200	Enhancers	Liver	Liver
27	chr10:116393200-116395000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr10:116393200-116395200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr10:116393200-116395400	Enhancers	Brain Anterior Caudate	brain
30	chr10:116393400-116394400	Enhancers	Colon Smooth Muscle	Colon
31	chr10:116393400-116394800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:116393400-116394800	Enhancers	HepG2	liver
33	chr10:116393400-116395000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:116393400-116395000	Weak transcription	Aorta	Aorta
35	chr10:116393400-116395000	Weak transcription	Pancreas	Pancrea
36	chr10:116393400-116395000	Weak transcription	Psoas Muscle	Psoas
37	chr10:116393400-116395200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:116393400-116395400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:116393400-116396200	Enhancers	Brain Cingulate Gyrus	brain
40	chr10:116393600-116394400	Enhancers	Fetal Intestine Small	intestine
41	chr10:116393600-116394600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:116393600-116394600	Weak transcription	Brain Angular Gyrus	brain
43	chr10:116393600-116394600	Enhancers	Stomach Smooth Muscle	stomach
44	chr10:116393600-116394600	Enhancers	NH-A	brain
45	chr10:116393600-116394800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:116393600-116394800	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:116393600-116394800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:116393600-116394800	Weak transcription	Stomach Mucosa	stomach
49	chr10:116393600-116394800	Enhancers	Hela-S3	cervix
50	chr10:116393600-116394800	Enhancers	Osteobl	bone

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