Variant report

Variant	rs74158073
Chromosome Location	chr10:116593920-116593921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116592314..116594940-chr10:116598263..116599830,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1007847	1.00[EUR][1000 genomes]
rs11196974	1.00[EUR][1000 genomes]
rs11197025	1.00[EUR][1000 genomes]
rs11816826	1.00[ASN][1000 genomes]
rs11817330	1.00[ASN][1000 genomes]
rs11817337	1.00[ASN][1000 genomes]
rs1413196	1.00[ASN][1000 genomes]
rs17092260	1.00[ASN][1000 genomes]
rs17092288	1.00[ASN][1000 genomes]
rs17092299	1.00[ASN][1000 genomes]
rs17092337	1.00[ASN][1000 genomes]
rs5023856	1.00[EUR][1000 genomes]
rs55954958	1.00[EUR][1000 genomes]
rs55993822	1.00[EUR][1000 genomes]
rs56044402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56866557	1.00[EUR][1000 genomes]
rs57000201	1.00[EUR][1000 genomes]
rs57707843	1.00[EUR][1000 genomes]
rs58042685	1.00[EUR][1000 genomes]
rs58836644	1.00[EUR][1000 genomes]
rs59738549	1.00[ASN][1000 genomes]
rs59741104	1.00[EUR][1000 genomes]
rs60460075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60791428	1.00[EUR][1000 genomes]
rs60870849	1.00[ASN][1000 genomes]
rs61669564	1.00[ASN][1000 genomes]
rs61867919	1.00[ASN][1000 genomes]
rs61867923	1.00[ASN][1000 genomes]
rs61867924	1.00[ASN][1000 genomes]
rs61867925	1.00[ASN][1000 genomes]
rs61867929	1.00[ASN][1000 genomes]
rs61867933	1.00[ASN][1000 genomes]
rs61869065	1.00[ASN][1000 genomes]
rs61869066	1.00[ASN][1000 genomes]
rs61869068	1.00[ASN][1000 genomes]
rs61869069	1.00[ASN][1000 genomes]
rs61869071	1.00[ASN][1000 genomes]
rs62641708	1.00[EUR][1000 genomes]
rs7069069	1.00[EUR][1000 genomes]
rs7070890	1.00[ASN][1000 genomes]
rs7077957	1.00[EUR][1000 genomes]
rs7078359	1.00[EUR][1000 genomes]
rs7082100	1.00[EUR][1000 genomes]
rs7084277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73363911	1.00[ASN][1000 genomes]
rs73371850	1.00[EUR][1000 genomes]
rs73371851	1.00[EUR][1000 genomes]
rs74158064	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158066	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158075	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158076	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158079	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158083	1.00[ASN][1000 genomes]
rs74158090	1.00[EUR][1000 genomes]
rs74159814	1.00[EUR][1000 genomes]
rs74159822	1.00[EUR][1000 genomes]
rs74159823	1.00[EUR][1000 genomes]
rs74159827	1.00[EUR][1000 genomes]
rs7894976	1.00[EUR][1000 genomes]
rs7899382	1.00[EUR][1000 genomes]
rs9421195	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116582600-116596800	Weak transcription	Lung	lung
2	chr10:116582600-116597000	Weak transcription	Spleen	Spleen
3	chr10:116582800-116604400	Weak transcription	Esophagus	oesophagus
4	chr10:116583000-116594800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:116583000-116596200	Weak transcription	Brain Substantia Nigra	brain
6	chr10:116583000-116617600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:116583200-116594000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:116583200-116616800	Weak transcription	K562	blood
9	chr10:116583800-116601600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:116584400-116597400	Weak transcription	Fetal Brain Male	brain
11	chr10:116584600-116608400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:116585800-116596400	Weak transcription	Brain Germinal Matrix	brain
13	chr10:116586000-116594600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:116586000-116604800	Weak transcription	Fetal Heart	heart
15	chr10:116586200-116600200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:116587200-116594600	Weak transcription	HSMMtube	muscle
17	chr10:116588600-116596000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:116588800-116605600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:116589200-116609000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:116589400-116596200	Weak transcription	Ovary	ovary
21	chr10:116589400-116602800	Weak transcription	Gastric	stomach
22	chr10:116589600-116596200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:116589600-116602600	Weak transcription	Pancreas	Pancrea
24	chr10:116589600-116609000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:116589600-116626600	Weak transcription	Stomach Mucosa	stomach
26	chr10:116589600-116640600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:116589800-116594600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:116590000-116604400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr10:116590200-116614400	Strong transcription	HSMM	muscle
30	chr10:116590400-116594600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr10:116590400-116596600	Weak transcription	Fetal Intestine Small	intestine
32	chr10:116590400-116609800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:116590600-116597400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:116590600-116600800	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:116590800-116599200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:116590800-116600800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:116590800-116609400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:116590800-116609600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:116590800-116613200	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr10:116590800-116614800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:116590800-116616600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:116590800-116624400	Strong transcription	Dnd41	blood
43	chr10:116590800-116625600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:116590800-116626400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr10:116591000-116595600	Strong transcription	HMEC	breast
46	chr10:116591000-116598800	Strong transcription	Primary hematopoietic stem cells	blood
47	chr10:116591000-116601200	Strong transcription	Fetal Lung	lung
48	chr10:116591000-116603400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:116591000-116606800	Strong transcription	Liver	Liver
50	chr10:116591000-116610800	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links