Variant report

Variant	rs7115556
Chromosome Location	chr11:9549936-9549937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:9549118..9551478-chr11:9570161..9571670,2	K562	blood:
2	chr11:9548940..9552769-chr11:9586407..9589954,6	MCF-7	breast:
3	chr11:9548599..9552302-chr11:9610096..9614093,4	K562	blood:
4	chr11:9481456..9483921-chr11:9548991..9551405,2	K562	blood:
5	chr11:9484087..9486819-chr11:9549318..9550945,2	K562	blood:
6	chr11:9548204..9550324-chr11:9601758..9603593,2	K562	blood:
7	chr11:9549697..9552302-chr11:9612422..9614093,2	K562	blood:
8	chr11:9547770..9558262-chr11:9588302..9599721,48	MCF-7	breast:
9	chr11:9549821..9553673-chr11:9553881..9558124,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000243869	Chromatin interaction
ENSG00000268403	Chromatin interaction
ENSG00000166483	Chromatin interaction
ENSG00000238387	Chromatin interaction
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11824009	0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs11825542	0.83[AFR][1000 genomes]
rs41369549	1.00[YRI][hapmap]
rs4328248	0.85[AFR][1000 genomes]
rs4509755	1.00[EUR][1000 genomes]
rs57760683	0.84[AFR][1000 genomes]
rs59206639	0.89[AFR][1000 genomes]
rs59403069	0.82[AFR][1000 genomes]
rs59432040	0.87[AFR][1000 genomes]
rs61003414	0.87[AFR][1000 genomes]
rs61708669	0.84[AFR][1000 genomes]
rs7104568	1.00[YRI][hapmap]
rs7119701	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9491400-9551600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:9523400-9550800	Weak transcription	Colonic Mucosa	Colon
3	chr11:9523400-9551000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:9528800-9550400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:9529200-9550800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:9530200-9551000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:9531000-9550800	Weak transcription	Pancreas	Pancrea
8	chr11:9533400-9550600	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr11:9534600-9556800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:9535200-9551200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr11:9535400-9550800	Weak transcription	Brain Anterior Caudate	brain
12	chr11:9535800-9550800	Weak transcription	Esophagus	oesophagus
13	chr11:9535800-9554800	Weak transcription	Ovary	ovary
14	chr11:9536200-9550600	Weak transcription	HSMMtube	muscle
15	chr11:9536200-9552400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:9536400-9554800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:9537400-9551200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:9538000-9550800	Weak transcription	Right Ventricle	heart
19	chr11:9538200-9550400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:9538200-9550800	Weak transcription	Brain Substantia Nigra	brain
21	chr11:9538800-9562000	Weak transcription	Small Intestine	intestine
22	chr11:9539000-9550800	Weak transcription	Brain Germinal Matrix	brain
23	chr11:9539800-9551000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:9539800-9551000	Weak transcription	Dnd41	blood
25	chr11:9540000-9550600	Weak transcription	K562	blood
26	chr11:9541000-9550800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:9541200-9550400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:9541200-9550600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:9541200-9551800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:9545000-9555000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:9546000-9550800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:9546200-9551400	Strong transcription	Primary T cells from cord blood	blood
33	chr11:9546400-9550000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:9546400-9550600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:9546400-9550800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:9546600-9550000	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:9546600-9550800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:9546800-9551000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:9547000-9550600	Weak transcription	Fetal Heart	heart
40	chr11:9547200-9550800	Weak transcription	Psoas Muscle	Psoas
41	chr11:9547400-9550800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:9547400-9556400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:9547600-9550200	Weak transcription	Liver	Liver
44	chr11:9547600-9550400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:9547600-9550800	Weak transcription	Left Ventricle	heart
46	chr11:9547600-9551200	Weak transcription	Gastric	stomach
47	chr11:9547600-9551200	Weak transcription	Lung	lung
48	chr11:9547600-9551800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:9547600-9569800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr11:9547800-9550600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links