Variant report

Variant	rs59432040
Chromosome Location	chr11:9533332-9533333
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9480637..9483121-chr11:9531195..9534021,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268403	Chromatin interaction
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11824009	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825542	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4328248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4414214	1.00[AMR][1000 genomes]
rs57760683	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59206639	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59403069	0.90[AFR][1000 genomes]
rs60748041	1.00[AMR][1000 genomes]
rs61003414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61708669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7107607	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7115224	1.00[AMR][1000 genomes]
rs7115556	0.87[AFR][1000 genomes]
rs7119701	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
3	nsv1039537	chr11:9455387-9535970	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9484600-9544800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:9491400-9551600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:9501800-9534000	Weak transcription	Psoas Muscle	Psoas
4	chr11:9518800-9534000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:9519200-9534200	Weak transcription	Fetal Brain Female	brain
6	chr11:9521000-9545200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:9523000-9534000	Weak transcription	HMEC	breast
8	chr11:9523400-9534000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:9523400-9534000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:9523400-9534000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:9523400-9534000	Weak transcription	Aorta	Aorta
12	chr11:9523400-9534000	Weak transcription	Brain Angular Gyrus	brain
13	chr11:9523400-9534000	Weak transcription	Fetal Brain Male	brain
14	chr11:9523400-9534200	Weak transcription	Right Ventricle	heart
15	chr11:9523400-9550800	Weak transcription	Colonic Mucosa	Colon
16	chr11:9523400-9551000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:9525200-9533600	Weak transcription	Placenta	Placenta
18	chr11:9525400-9534000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:9528000-9534800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:9528000-9540000	Strong transcription	Fetal Thymus	thymus
21	chr11:9528400-9533600	Weak transcription	Fetal Lung	lung
22	chr11:9528800-9534000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:9528800-9534000	Weak transcription	Ovary	ovary
24	chr11:9528800-9534200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:9528800-9534200	Weak transcription	Hela-S3	cervix
26	chr11:9528800-9550400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:9529200-9550800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:9529600-9534000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:9530000-9534000	Enhancers	Fetal Intestine Large	intestine
30	chr11:9530000-9541000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:9530200-9538400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:9530200-9538800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr11:9530200-9539600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:9530200-9540000	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:9530200-9540200	Strong transcription	Fetal Muscle Trunk	muscle
36	chr11:9530200-9541400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:9530200-9541400	Strong transcription	Adipose Nuclei	Adipose
38	chr11:9530200-9544600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:9530200-9551000	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:9530400-9533600	Weak transcription	NHEK	skin
41	chr11:9530400-9539400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:9530600-9533600	Weak transcription	Colon Smooth Muscle	Colon
43	chr11:9530600-9534000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:9530600-9534000	Enhancers	HepG2	liver
45	chr11:9530800-9533600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr11:9530800-9534000	Weak transcription	Gastric	stomach
47	chr11:9530800-9534000	Weak transcription	Left Ventricle	heart
48	chr11:9531000-9533600	Weak transcription	Primary T cells from cord blood	blood
49	chr11:9531000-9533600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:9531000-9533600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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