Variant report

Variant	rs61003414
Chromosome Location	chr11:9542950-9542951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9537904..9540865-chr11:9540885..9544510,3	MCF-7	breast:
2	chr11:9534694..9537562-chr11:9542413..9544187,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11823865	1.00[EUR][1000 genomes]
rs11824009	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825542	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1865560	1.00[EUR][1000 genomes]
rs34831554	1.00[EUR][1000 genomes]
rs4328248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4414214	1.00[AMR][1000 genomes]
rs4910057	1.00[EUR][1000 genomes]
rs57760683	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58608279	1.00[EUR][1000 genomes]
rs59206639	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59403069	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59432040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60199973	1.00[EUR][1000 genomes]
rs60748041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61708669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107607	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113100	1.00[EUR][1000 genomes]
rs7115224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115556	0.87[AFR][1000 genomes]
rs7119701	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408245	1.00[EUR][1000 genomes]
rs73408270	1.00[EUR][1000 genomes]
rs73408291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9484600-9544800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:9491400-9551600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:9521000-9545200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:9523400-9550800	Weak transcription	Colonic Mucosa	Colon
5	chr11:9523400-9551000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:9528800-9550400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:9529200-9550800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:9530200-9544600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:9530200-9551000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:9531000-9550800	Weak transcription	Pancreas	Pancrea
11	chr11:9532600-9546400	Weak transcription	Stomach Mucosa	stomach
12	chr11:9533400-9550600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr11:9534000-9543800	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:9534000-9544600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:9534600-9545800	Weak transcription	Fetal Heart	heart
16	chr11:9534600-9546800	Weak transcription	Gastric	stomach
17	chr11:9534600-9556800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:9535000-9548400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:9535000-9548800	Weak transcription	NHEK	skin
20	chr11:9535200-9548800	Weak transcription	Fetal Brain Male	brain
21	chr11:9535200-9551200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:9535400-9550800	Weak transcription	Brain Anterior Caudate	brain
23	chr11:9535800-9548600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:9535800-9549000	Weak transcription	Aorta	Aorta
25	chr11:9535800-9550800	Weak transcription	Esophagus	oesophagus
26	chr11:9535800-9554800	Weak transcription	Ovary	ovary
27	chr11:9536000-9543400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:9536200-9550600	Weak transcription	HSMMtube	muscle
29	chr11:9536200-9552400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:9536400-9554800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:9537400-9551200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:9538000-9543400	Weak transcription	Thymus	Thymus
33	chr11:9538000-9546800	Weak transcription	Lung	lung
34	chr11:9538000-9550800	Weak transcription	Right Ventricle	heart
35	chr11:9538200-9545600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr11:9538200-9545800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:9538200-9546800	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:9538200-9547400	Weak transcription	Spleen	Spleen
39	chr11:9538200-9548600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:9538200-9548600	Weak transcription	Hela-S3	cervix
41	chr11:9538200-9549000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:9538200-9550400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr11:9538200-9550800	Weak transcription	Brain Substantia Nigra	brain
44	chr11:9538400-9545800	Weak transcription	NH-A	brain
45	chr11:9538400-9548600	Weak transcription	A549	lung
46	chr11:9538400-9548800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:9538600-9545000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:9538600-9545600	Weak transcription	NHDF-Ad	bronchial
49	chr11:9538600-9546800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:9538600-9547000	Weak transcription	Psoas Muscle	Psoas

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