Variant report

Variant	rs4910057
Chromosome Location	chr11:9624067-9624068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9622499..9625012-chr11:9634792..9636736,2	K562	blood:
2	chr11:9623421..9625304-chr11:9627485..9629414,2	K562	blood:
3	chr11:9616955..9619245-chr11:9624041..9625658,2	K562	blood:
4	chr11:9616144..9619684-chr11:9621223..9625658,6	K562	blood:

Variant related genes	Relation type
ENSG00000243964	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11823865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824009	1.00[EUR][1000 genomes]
rs11825542	1.00[EUR][1000 genomes]
rs1865560	1.00[EUR][1000 genomes]
rs34831554	1.00[EUR][1000 genomes]
rs4328248	1.00[EUR][1000 genomes]
rs57760683	1.00[EUR][1000 genomes]
rs58608279	1.00[EUR][1000 genomes]
rs59206639	1.00[EUR][1000 genomes]
rs59403069	1.00[EUR][1000 genomes]
rs60199973	1.00[EUR][1000 genomes]
rs60748041	1.00[EUR][1000 genomes]
rs61003414	1.00[EUR][1000 genomes]
rs61708669	1.00[EUR][1000 genomes]
rs7107607	1.00[EUR][1000 genomes]
rs7113100	1.00[EUR][1000 genomes]
rs7115224	1.00[EUR][1000 genomes]
rs7119701	1.00[EUR][1000 genomes]
rs73408245	1.00[EUR][1000 genomes]
rs73408270	1.00[EUR][1000 genomes]
rs73408291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9597200-9635000	Weak transcription	Pancreas	Pancrea
2	chr11:9610600-9627200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:9610600-9635000	Weak transcription	Aorta	Aorta
4	chr11:9621800-9624200	Flanking Active TSS	GM12878-XiMat	blood
5	chr11:9622200-9624200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:9622200-9624200	Enhancers	NHLF	lung
7	chr11:9622200-9624400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:9622200-9624400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:9622400-9624200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:9622600-9624200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:9622600-9624400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr11:9622600-9624400	Enhancers	Fetal Muscle Trunk	muscle
13	chr11:9622800-9624200	Enhancers	Right Ventricle	heart
14	chr11:9623000-9624200	Enhancers	Fetal Muscle Leg	muscle
15	chr11:9623000-9624200	Enhancers	HSMMtube	muscle
16	chr11:9623200-9624200	Enhancers	Primary hematopoietic stem cells	blood
17	chr11:9623200-9628200	Weak transcription	Fetal Intestine Large	intestine
18	chr11:9623400-9624200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr11:9623400-9624200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr11:9623400-9624200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:9623400-9624200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:9623400-9624200	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr11:9623400-9624400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr11:9623400-9624600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr11:9623400-9625600	Weak transcription	K562	blood
26	chr11:9623400-9627600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:9623400-9628400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:9623400-9628600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:9623400-9631600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:9623400-9634600	Weak transcription	Thymus	Thymus
31	chr11:9623600-9624400	Enhancers	Primary B cells from cord blood	blood
32	chr11:9623600-9624400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:9623600-9624400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:9623600-9624600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr11:9623600-9624600	Enhancers	Dnd41	blood
36	chr11:9623600-9625200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:9623600-9625200	Weak transcription	HepG2	liver
38	chr11:9623600-9625400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:9623600-9625400	Weak transcription	NH-A	brain
40	chr11:9623600-9625600	Weak transcription	Fetal Thymus	thymus
41	chr11:9623600-9625800	Enhancers	Primary B cells from peripheral blood	blood
42	chr11:9623600-9628200	Weak transcription	Fetal Intestine Small	intestine
43	chr11:9623600-9628400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:9623600-9628600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:9623600-9628800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:9623600-9630400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:9623600-9631400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:9623600-9631600	Weak transcription	Placenta	Placenta
49	chr11:9623600-9633600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:9623600-9634200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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