Variant report

Variant	rs7113100
Chromosome Location	chr11:9426498-9426499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9425009..9427171-chr11:9432321..9434699,2	MCF-7	breast:
2	chr11:9425144..9428680-chr11:9430784..9433780,3	MCF-7	breast:
3	chr11:9419108..9421359-chr11:9425279..9427169,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205339	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11823865	1.00[EUR][1000 genomes]
rs11824009	1.00[EUR][1000 genomes]
rs11825542	1.00[EUR][1000 genomes]
rs1865560	1.00[EUR][1000 genomes]
rs34831554	1.00[EUR][1000 genomes]
rs4328248	1.00[EUR][1000 genomes]
rs4910057	1.00[EUR][1000 genomes]
rs57760683	1.00[EUR][1000 genomes]
rs58608279	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59206639	1.00[EUR][1000 genomes]
rs59403069	1.00[EUR][1000 genomes]
rs60199973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60748041	1.00[EUR][1000 genomes]
rs61003414	1.00[EUR][1000 genomes]
rs61708669	1.00[EUR][1000 genomes]
rs7107607	1.00[EUR][1000 genomes]
rs7115224	1.00[EUR][1000 genomes]
rs7119701	1.00[EUR][1000 genomes]
rs73408245	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9407200-9427000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:9407200-9430400	Weak transcription	Spleen	Spleen
3	chr11:9407200-9430600	Weak transcription	Esophagus	oesophagus
4	chr11:9407200-9430600	Weak transcription	Pancreas	Pancrea
5	chr11:9407200-9430800	Weak transcription	Gastric	stomach
6	chr11:9407400-9427000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:9407400-9427000	Weak transcription	Left Ventricle	heart
8	chr11:9407600-9431400	Weak transcription	HSMMtube	muscle
9	chr11:9407600-9442000	Weak transcription	Fetal Brain Male	brain
10	chr11:9407600-9464000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:9407800-9427000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:9408200-9431000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:9408400-9428400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:9408800-9427000	Weak transcription	Fetal Brain Female	brain
15	chr11:9408800-9431200	Weak transcription	Brain Substantia Nigra	brain
16	chr11:9409000-9427000	Weak transcription	Liver	Liver
17	chr11:9409000-9427200	Weak transcription	HMEC	breast
18	chr11:9409200-9427000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:9409200-9427200	Weak transcription	Psoas Muscle	Psoas
20	chr11:9415800-9430000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:9416000-9456000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:9418000-9430400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:9418200-9432200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:9419200-9446600	Weak transcription	Small Intestine	intestine
25	chr11:9419600-9429800	Weak transcription	Fetal Heart	heart
26	chr11:9419600-9430800	Weak transcription	Brain Angular Gyrus	brain
27	chr11:9419600-9432400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:9419600-9471000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:9419800-9427000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:9419800-9430600	Weak transcription	Ovary	ovary
31	chr11:9419800-9430800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:9419800-9431200	Weak transcription	Brain Anterior Caudate	brain
33	chr11:9419800-9431600	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:9419800-9444200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr11:9420000-9430400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:9420000-9430800	Weak transcription	Primary B cells from cord blood	blood
37	chr11:9420000-9432000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:9420000-9440200	Weak transcription	Fetal Kidney	kidney
39	chr11:9420200-9431000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:9420200-9432200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr11:9420400-9427000	Weak transcription	Adipose Nuclei	Adipose
42	chr11:9420400-9432200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:9420600-9430600	Weak transcription	Aorta	Aorta
44	chr11:9420600-9430800	Weak transcription	Colon Smooth Muscle	Colon
45	chr11:9420600-9442000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:9420600-9450400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr11:9420800-9427200	Weak transcription	Primary T cells from cord blood	blood
48	chr11:9421000-9471200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:9421400-9427000	Weak transcription	NHLF	lung
50	chr11:9421600-9427000	Weak transcription	NHDF-Ad	bronchial

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