Variant report

Variant	rs1865560
Chromosome Location	chr11:9641193-9641194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9639664..9642964-chr11:9645191..9649077,5	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11823865	1.00[EUR][1000 genomes]
rs11824009	1.00[EUR][1000 genomes]
rs11825542	1.00[EUR][1000 genomes]
rs34831554	1.00[EUR][1000 genomes]
rs4328248	1.00[EUR][1000 genomes]
rs4910057	1.00[EUR][1000 genomes]
rs57760683	1.00[EUR][1000 genomes]
rs59206639	1.00[EUR][1000 genomes]
rs59403069	1.00[EUR][1000 genomes]
rs60748041	1.00[EUR][1000 genomes]
rs61003414	1.00[EUR][1000 genomes]
rs61708669	1.00[EUR][1000 genomes]
rs7107607	1.00[EUR][1000 genomes]
rs7113100	1.00[EUR][1000 genomes]
rs7115224	1.00[EUR][1000 genomes]
rs7119701	1.00[EUR][1000 genomes]
rs73408245	1.00[EUR][1000 genomes]
rs73408270	1.00[EUR][1000 genomes]
rs73408291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9635400-9646400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:9636400-9647400	Weak transcription	Right Atrium	heart
3	chr11:9636600-9642200	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:9636800-9641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:9637000-9641200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:9637000-9641200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:9637000-9641400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:9637000-9641600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:9637000-9646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:9637200-9644600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr11:9638000-9642200	Enhancers	Primary B cells from cord blood	blood
12	chr11:9638200-9642400	Enhancers	Placenta	Placenta
13	chr11:9638200-9646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:9638600-9641400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:9638600-9646600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:9638800-9641400	Weak transcription	Spleen	Spleen
17	chr11:9639800-9648600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:9640000-9642000	Enhancers	GM12878-XiMat	blood
19	chr11:9640000-9646800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:9640200-9641400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:9640200-9641600	Enhancers	HSMMtube	muscle

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