Variant report

Variant	rs7115224
Chromosome Location	chr11:9489665-9489666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9479816..9484549-chr11:9487573..9491923,7	MCF-7	breast:
2	chr11:9483261..9486487-chr11:9489632..9491897,4	MCF-7	breast:
3	chr11:9481235..9483229-chr11:9489088..9492282,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166478	Chromatin interaction
ENSG00000268403	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11823865	1.00[EUR][1000 genomes]
rs11824009	0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1865560	1.00[EUR][1000 genomes]
rs34831554	1.00[EUR][1000 genomes]
rs4243946	1.00[TSI][hapmap]
rs4328248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4331093	1.00[TSI][hapmap]
rs4414214	1.00[AMR][1000 genomes]
rs4601780	1.00[TSI][hapmap]
rs4910057	1.00[EUR][1000 genomes]
rs4910448	1.00[TSI][hapmap]
rs57760683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58608279	1.00[EUR][1000 genomes]
rs59206639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59403069	1.00[EUR][1000 genomes]
rs59432040	1.00[AMR][1000 genomes]
rs60199973	1.00[EUR][1000 genomes]
rs60748041	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61003414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61708669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113100	1.00[EUR][1000 genomes]
rs7119701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408245	1.00[EUR][1000 genomes]
rs73408270	1.00[EUR][1000 genomes]
rs73408291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv1039537	chr11:9455387-9535970	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9483200-9494200	Weak transcription	Gastric	stomach
2	chr11:9483200-9495000	Weak transcription	Spleen	Spleen
3	chr11:9483400-9499800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:9483600-9492400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:9483600-9493400	Weak transcription	Lung	lung
6	chr11:9483600-9494000	Weak transcription	Ovary	ovary
7	chr11:9483600-9494600	Weak transcription	Esophagus	oesophagus
8	chr11:9483600-9499400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:9483600-9499400	Weak transcription	Pancreas	Pancrea
10	chr11:9483600-9518600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:9484000-9492000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:9484000-9492400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:9484000-9493400	Weak transcription	Brain Substantia Nigra	brain
14	chr11:9484000-9493800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:9484000-9494000	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:9484000-9494000	Weak transcription	HSMMtube	muscle
17	chr11:9484000-9494200	Weak transcription	Brain Anterior Caudate	brain
18	chr11:9484000-9494200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:9484000-9494600	Weak transcription	Fetal Brain Female	brain
20	chr11:9484000-9494800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:9484000-9495000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr11:9484000-9495200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:9484000-9499600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:9484200-9491400	Weak transcription	Liver	Liver
25	chr11:9484200-9491600	Weak transcription	Fetal Lung	lung
26	chr11:9484200-9491600	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:9484200-9491600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:9484200-9492000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:9484200-9492000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:9484200-9492000	Weak transcription	Left Ventricle	heart
31	chr11:9484200-9492000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:9484200-9492600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:9484200-9492800	Weak transcription	Fetal Intestine Large	intestine
34	chr11:9484200-9492800	Weak transcription	Fetal Stomach	stomach
35	chr11:9484200-9493000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:9484200-9493000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:9484200-9493000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:9484200-9493400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:9484200-9493800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:9484200-9493800	Weak transcription	Psoas Muscle	Psoas
41	chr11:9484200-9494000	Weak transcription	Fetal Thymus	thymus
42	chr11:9484200-9494200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr11:9484200-9494200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:9484200-9494800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:9484200-9494800	Weak transcription	Fetal Brain Male	brain
46	chr11:9484200-9494800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:9484200-9494800	Weak transcription	HSMM	muscle
48	chr11:9484200-9495200	Weak transcription	Fetal Kidney	kidney
49	chr11:9484200-9499800	Weak transcription	Brain Angular Gyrus	brain
50	chr11:9484400-9491600	Weak transcription	Primary T cells fromperipheralblood	blood

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