Variant report

Variant	rs58608279
Chromosome Location	chr11:9414029-9414030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9334119..9338283-chr11:9409615..9419892,10	K562	blood:

Variant related genes	Relation type
ENSG00000166471	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11823865	1.00[EUR][1000 genomes]
rs11824009	1.00[EUR][1000 genomes]
rs11825542	1.00[EUR][1000 genomes]
rs34831554	1.00[EUR][1000 genomes]
rs4328248	1.00[EUR][1000 genomes]
rs4910057	1.00[EUR][1000 genomes]
rs57760683	1.00[EUR][1000 genomes]
rs59206639	1.00[EUR][1000 genomes]
rs59403069	1.00[EUR][1000 genomes]
rs60199973	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60748041	1.00[EUR][1000 genomes]
rs61003414	1.00[EUR][1000 genomes]
rs61708669	1.00[EUR][1000 genomes]
rs7107607	1.00[EUR][1000 genomes]
rs7113100	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115224	1.00[EUR][1000 genomes]
rs7119701	1.00[EUR][1000 genomes]
rs73408245	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9407200-9425400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:9407200-9427000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:9407200-9430400	Weak transcription	Spleen	Spleen
4	chr11:9407200-9430600	Weak transcription	Esophagus	oesophagus
5	chr11:9407200-9430600	Weak transcription	Pancreas	Pancrea
6	chr11:9407200-9430800	Weak transcription	Gastric	stomach
7	chr11:9407400-9414200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:9407400-9414200	Weak transcription	Thymus	Thymus
9	chr11:9407400-9427000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:9407400-9427000	Weak transcription	Left Ventricle	heart
11	chr11:9407600-9431400	Weak transcription	HSMMtube	muscle
12	chr11:9407600-9442000	Weak transcription	Fetal Brain Male	brain
13	chr11:9407600-9464000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:9407800-9417000	Weak transcription	Placenta	Placenta
15	chr11:9407800-9417400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:9407800-9425400	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:9407800-9427000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:9408000-9419000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:9408000-9419200	Weak transcription	Fetal Lung	lung
20	chr11:9408000-9419800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:9408000-9424800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:9408200-9418000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:9408200-9419600	Weak transcription	Primary B cells from cord blood	blood
24	chr11:9408200-9431000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:9408400-9419000	Weak transcription	Brain Anterior Caudate	brain
26	chr11:9408400-9419200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:9408400-9428400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:9408600-9419400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:9408800-9426400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:9408800-9427000	Weak transcription	Fetal Brain Female	brain
31	chr11:9408800-9431200	Weak transcription	Brain Substantia Nigra	brain
32	chr11:9409000-9414200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr11:9409000-9414800	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:9409000-9415200	Strong transcription	Fetal Intestine Small	intestine
35	chr11:9409000-9417200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:9409000-9418000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:9409000-9418000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:9409000-9418400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:9409000-9418400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:9409000-9419000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:9409000-9419400	Weak transcription	Adipose Nuclei	Adipose
42	chr11:9409000-9419400	Weak transcription	NHDF-Ad	bronchial
43	chr11:9409000-9421000	Weak transcription	NHLF	lung
44	chr11:9409000-9422800	Weak transcription	HUVEC	blood vessel
45	chr11:9409000-9424800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:9409000-9424800	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr11:9409000-9427000	Weak transcription	Liver	Liver
48	chr11:9409000-9427200	Weak transcription	HMEC	breast
49	chr11:9409200-9414400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:9409200-9414600	Weak transcription	Colon Smooth Muscle	Colon

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