Variant report

Variant	rs34831554
Chromosome Location	chr11:9559049-9559050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9558444..9561115-chr11:9634795..9636329,2	K562	blood:
2	chr11:9553327..9556356-chr11:9558618..9561853,3	K562	blood:
3	chr11:9556608..9559728-chr11:9560496..9563324,3	K562	blood:
4	chr11:9549975..9559413-chr11:9590114..9600515,26	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238387	Chromatin interaction
ENSG00000166483	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11823865	1.00[EUR][1000 genomes]
rs11824009	1.00[EUR][1000 genomes]
rs11825542	1.00[EUR][1000 genomes]
rs1865560	1.00[EUR][1000 genomes]
rs4328248	1.00[EUR][1000 genomes]
rs4910057	1.00[EUR][1000 genomes]
rs57760683	1.00[EUR][1000 genomes]
rs58608279	1.00[EUR][1000 genomes]
rs59206639	1.00[EUR][1000 genomes]
rs59403069	1.00[EUR][1000 genomes]
rs60199973	1.00[EUR][1000 genomes]
rs60748041	1.00[EUR][1000 genomes]
rs61003414	1.00[EUR][1000 genomes]
rs61708669	1.00[EUR][1000 genomes]
rs7107607	1.00[EUR][1000 genomes]
rs7113100	1.00[EUR][1000 genomes]
rs7115224	1.00[EUR][1000 genomes]
rs7119701	1.00[EUR][1000 genomes]
rs73408245	1.00[EUR][1000 genomes]
rs73408270	1.00[EUR][1000 genomes]
rs73408291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9538800-9562000	Weak transcription	Small Intestine	intestine
2	chr11:9547600-9569800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:9547800-9586600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:9549400-9581000	Weak transcription	Primary B cells from cord blood	blood
5	chr11:9549800-9578200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:9550600-9586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:9551000-9581200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:9551200-9570600	Weak transcription	Thymus	Thymus
9	chr11:9551400-9562600	Weak transcription	Pancreas	Pancrea
10	chr11:9551400-9582600	Weak transcription	Primary T cells from cord blood	blood
11	chr11:9551800-9573400	Weak transcription	Right Ventricle	heart
12	chr11:9553000-9573400	Weak transcription	Gastric	stomach
13	chr11:9555200-9559600	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:9555200-9571800	Weak transcription	Ovary	ovary
15	chr11:9556200-9570000	Weak transcription	HSMMtube	muscle
16	chr11:9556400-9560200	Weak transcription	Aorta	Aorta
17	chr11:9556400-9561400	Weak transcription	Fetal Intestine Small	intestine
18	chr11:9557000-9573600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:9557200-9560200	Weak transcription	HepG2	liver
20	chr11:9557200-9562000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:9557200-9579000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:9557400-9568000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:9557400-9584400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:9558000-9568000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:9558200-9571600	Weak transcription	Adipose Nuclei	Adipose

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