Variant report

Variant	rs7119701
Chromosome Location	chr11:9493151-9493152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9479692..9486524-chr11:9491765..9498081,14	K562	blood:

Variant related genes	Relation type
ENSG00000166478	Chromatin interaction
ENSG00000268403	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11823865	1.00[EUR][1000 genomes]
rs11824009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825542	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1865560	1.00[EUR][1000 genomes]
rs34831554	1.00[EUR][1000 genomes]
rs4328248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4414214	1.00[AMR][1000 genomes]
rs4910057	1.00[EUR][1000 genomes]
rs57760683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58608279	1.00[EUR][1000 genomes]
rs59206639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59403069	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59432040	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60199973	1.00[EUR][1000 genomes]
rs60748041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61003414	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61708669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107607	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113100	1.00[EUR][1000 genomes]
rs7115224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115556	0.85[AFR][1000 genomes]
rs73408245	1.00[EUR][1000 genomes]
rs73408270	1.00[EUR][1000 genomes]
rs73408291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv1039537	chr11:9455387-9535970	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9483200-9494200	Weak transcription	Gastric	stomach
2	chr11:9483200-9495000	Weak transcription	Spleen	Spleen
3	chr11:9483400-9499800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:9483600-9493400	Weak transcription	Lung	lung
5	chr11:9483600-9494000	Weak transcription	Ovary	ovary
6	chr11:9483600-9494600	Weak transcription	Esophagus	oesophagus
7	chr11:9483600-9499400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:9483600-9499400	Weak transcription	Pancreas	Pancrea
9	chr11:9483600-9518600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:9484000-9493400	Weak transcription	Brain Substantia Nigra	brain
11	chr11:9484000-9493800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:9484000-9494000	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:9484000-9494000	Weak transcription	HSMMtube	muscle
14	chr11:9484000-9494200	Weak transcription	Brain Anterior Caudate	brain
15	chr11:9484000-9494200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:9484000-9494600	Weak transcription	Fetal Brain Female	brain
17	chr11:9484000-9494800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:9484000-9495000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:9484000-9495200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:9484000-9499600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:9484200-9493400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:9484200-9493800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:9484200-9493800	Weak transcription	Psoas Muscle	Psoas
24	chr11:9484200-9494000	Weak transcription	Fetal Thymus	thymus
25	chr11:9484200-9494200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:9484200-9494200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:9484200-9494800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:9484200-9494800	Weak transcription	Fetal Brain Male	brain
29	chr11:9484200-9494800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:9484200-9494800	Weak transcription	HSMM	muscle
31	chr11:9484200-9495200	Weak transcription	Fetal Kidney	kidney
32	chr11:9484200-9499800	Weak transcription	Brain Angular Gyrus	brain
33	chr11:9484400-9493200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:9484400-9495000	Weak transcription	Colonic Mucosa	Colon
35	chr11:9484600-9493200	Weak transcription	Placenta	Placenta
36	chr11:9484600-9493200	Weak transcription	Small Intestine	intestine
37	chr11:9484600-9493400	Weak transcription	Thymus	Thymus
38	chr11:9484600-9544800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr11:9484800-9493200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:9484800-9494000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr11:9484800-9494000	Weak transcription	Osteobl	bone
42	chr11:9484800-9494400	Weak transcription	NHLF	lung
43	chr11:9484800-9496000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:9485000-9493600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:9485000-9494200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr11:9485000-9494800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:9485000-9495000	Weak transcription	NHDF-Ad	bronchial
48	chr11:9485000-9495200	Weak transcription	Aorta	Aorta
49	chr11:9485200-9493400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:9485200-9493600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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