Variant report

Variant	rs11824009
Chromosome Location	chr11:9500364-9500365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9498298..9500683-chr11:9505385..9507215,2	K562	blood:
2	chr11:9481104..9483094-chr11:9498453..9502182,4	K562	blood:
3	chr11:9404717..9407646-chr11:9499124..9500871,2	K562	blood:

Variant related genes	Relation type
ENSG00000166478	Chromatin interaction
ENSG00000205339	Chromatin interaction
ENSG00000268403	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11823865	1.00[EUR][1000 genomes]
rs11825542	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1865560	1.00[EUR][1000 genomes]
rs34831554	1.00[EUR][1000 genomes]
rs41369549	0.83[YRI][hapmap]
rs4328248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4331093	1.00[TSI][hapmap]
rs4414214	1.00[AMR][1000 genomes]
rs4601780	1.00[TSI][hapmap]
rs4910057	1.00[EUR][1000 genomes]
rs4910448	1.00[TSI][hapmap]
rs57760683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58608279	1.00[EUR][1000 genomes]
rs59206639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59403069	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59432040	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60199973	1.00[EUR][1000 genomes]
rs60748041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61003414	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61708669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104568	0.83[YRI][hapmap]
rs7107607	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113100	1.00[EUR][1000 genomes]
rs7115224	0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115556	0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs7119701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408245	1.00[EUR][1000 genomes]
rs73408270	1.00[EUR][1000 genomes]
rs73408291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv1039537	chr11:9455387-9535970	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9483600-9518600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:9484600-9544800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:9485200-9520000	Weak transcription	Stomach Mucosa	stomach
4	chr11:9489600-9524000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:9489800-9523400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr11:9491400-9506200	Strong transcription	Liver	Liver
7	chr11:9491400-9525400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:9491400-9551600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:9491600-9502600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:9492000-9506000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:9492000-9527200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:9492200-9503000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:9492200-9525400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:9492600-9502800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:9492600-9505800	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr11:9492800-9507800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:9492800-9527800	Strong transcription	Fetal Stomach	stomach
18	chr11:9493200-9503200	Strong transcription	Placenta	Placenta
19	chr11:9493200-9506600	Strong transcription	Fetal Intestine Small	intestine
20	chr11:9493400-9503000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:9495400-9503600	Strong transcription	Brain Germinal Matrix	brain
22	chr11:9495600-9525400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:9495800-9505800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:9496000-9501200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:9496200-9520000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:9496200-9522600	Weak transcription	Fetal Heart	heart
27	chr11:9496600-9507000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:9496600-9516000	Weak transcription	Fetal Brain Male	brain
29	chr11:9496600-9517000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:9496600-9528200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:9496800-9503000	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:9497200-9500400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:9497200-9501200	Weak transcription	NHLF	lung
34	chr11:9497400-9517400	Weak transcription	Small Intestine	intestine
35	chr11:9498600-9503200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:9498600-9503400	Strong transcription	Stomach Smooth Muscle	stomach
37	chr11:9498800-9501800	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr11:9498800-9503000	Strong transcription	Primary B cells from cord blood	blood
39	chr11:9498800-9505600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:9498800-9506200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr11:9499000-9501600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:9499000-9503000	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:9499000-9503200	Strong transcription	Primary T cells from cord blood	blood
44	chr11:9499200-9502800	Strong transcription	Dnd41	blood
45	chr11:9499200-9503000	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:9499200-9503200	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr11:9499200-9503200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:9499200-9503200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr11:9499200-9503400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:9499200-9503600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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