Variant report

Variant	rs59206639
Chromosome Location	chr11:9547571-9547572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9481080..9484532-chr11:9545856..9548015,3	MCF-7	breast:
2	chr11:9546820..9549564-chr11:9551030..9552682,2	MCF-7	breast:
3	chr11:9546832..9549797-chr11:9594424..9596969,5	MCF-7	breast:
4	chr11:9537755..9539571-chr11:9546965..9548635,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268403	Chromatin interaction
ENSG00000166483	Chromatin interaction
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11823865	1.00[EUR][1000 genomes]
rs11824009	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825542	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1865560	1.00[EUR][1000 genomes]
rs34831554	1.00[EUR][1000 genomes]
rs4328248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4414214	1.00[AMR][1000 genomes]
rs4910057	1.00[EUR][1000 genomes]
rs57760683	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58608279	1.00[EUR][1000 genomes]
rs59403069	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59432040	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60199973	1.00[EUR][1000 genomes]
rs60748041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61003414	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61708669	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107607	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113100	1.00[EUR][1000 genomes]
rs7115224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115556	0.89[AFR][1000 genomes]
rs7119701	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408245	1.00[EUR][1000 genomes]
rs73408270	1.00[EUR][1000 genomes]
rs73408291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9491400-9551600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:9523400-9550800	Weak transcription	Colonic Mucosa	Colon
3	chr11:9523400-9551000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:9528800-9550400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:9529200-9550800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:9530200-9551000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:9531000-9550800	Weak transcription	Pancreas	Pancrea
8	chr11:9533400-9550600	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr11:9534600-9556800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:9535000-9548400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:9535000-9548800	Weak transcription	NHEK	skin
12	chr11:9535200-9548800	Weak transcription	Fetal Brain Male	brain
13	chr11:9535200-9551200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:9535400-9550800	Weak transcription	Brain Anterior Caudate	brain
15	chr11:9535800-9548600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:9535800-9549000	Weak transcription	Aorta	Aorta
17	chr11:9535800-9550800	Weak transcription	Esophagus	oesophagus
18	chr11:9535800-9554800	Weak transcription	Ovary	ovary
19	chr11:9536200-9550600	Weak transcription	HSMMtube	muscle
20	chr11:9536200-9552400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:9536400-9554800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:9537400-9551200	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr11:9538000-9550800	Weak transcription	Right Ventricle	heart
24	chr11:9538200-9548600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:9538200-9548600	Weak transcription	Hela-S3	cervix
26	chr11:9538200-9549000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:9538200-9550400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr11:9538200-9550800	Weak transcription	Brain Substantia Nigra	brain
29	chr11:9538400-9548600	Weak transcription	A549	lung
30	chr11:9538400-9548800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:9538600-9548200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:9538600-9548800	Weak transcription	Brain Angular Gyrus	brain
33	chr11:9538800-9548600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:9538800-9562000	Weak transcription	Small Intestine	intestine
35	chr11:9539000-9550800	Weak transcription	Brain Germinal Matrix	brain
36	chr11:9539200-9548600	Weak transcription	NHLF	lung
37	chr11:9539200-9549000	Weak transcription	HMEC	breast
38	chr11:9539400-9548600	Weak transcription	Fetal Intestine Large	intestine
39	chr11:9539600-9548000	Weak transcription	HUVEC	blood vessel
40	chr11:9539600-9549000	Weak transcription	Fetal Kidney	kidney
41	chr11:9539800-9551000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:9539800-9551000	Weak transcription	Dnd41	blood
43	chr11:9540000-9548800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr11:9540000-9550600	Weak transcription	K562	blood
45	chr11:9541000-9550800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:9541200-9550400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:9541200-9550600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:9541200-9551800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr11:9541400-9548600	Weak transcription	HSMM	muscle
50	chr11:9544000-9548800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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