Variant report

Variant	rs73408245
Chromosome Location	chr11:9635624-9635625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:42)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:42 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:9635394..9635930-chr17:7387420..7388279,2	Hela-S3	cervix:
2	chr11:9628848..9631872-chr11:9634232..9636277,3	MCF-7	breast:
3	chr11:9622499..9625012-chr11:9634792..9636736,2	K562	blood:
4	chr11:9595305..9596997-chr11:9634700..9636249,2	MCF-7	breast:
5	chr1:27191510..27192182-chr11:9634996..9635791,2	Hela-S3	cervix:
6	chr11:9634797..9636840-chr11:9770227..9772919,2	MCF-7	breast:
7	chr11:9625140..9628957-chr11:9633939..9638776,5	K562	blood:
8	chr11:9634944..9638366-chr11:9672187..9674812,3	K562	blood:
9	chr11:9635431..9636228-chr11:9685815..9686659,2	MCF-7	breast:
10	chr11:9635234..9636871-chr11:9761636..9763417,2	MCF-7	breast:
11	chr11:9634746..9636757-chr11:9685229..9688142,2	MCF-7	breast:
12	chr11:9634860..9635763-chr13:109923486..109924159,2	HCT-116	colon:
13	chr11:9634831..9638731-chr11:9777356..9781938,7	K562	blood:
14	chr11:9479842..9485152-chr11:9633556..9639403,13	K562	blood:
15	chr11:9609396..9611431-chr11:9633989..9636334,2	K562	blood:
16	chr11:9594264..9596863-chr11:9633913..9636459,6	K562	blood:
17	chr11:9634288..9636670-chr11:9753675..9757139,3	MCF-7	breast:
18	chr11:9558444..9561115-chr11:9634795..9636329,2	K562	blood:
19	chr11:9597111..9603831-chr11:9632388..9638176,11	K562	blood:
20	chr11:9633888..9637224-chr11:9645529..9649937,4	K562	blood:
21	chr11:9634299..9636932-chr11:9637562..9639803,2	MCF-7	breast:
22	chr11:9586513..9589428-chr11:9634913..9638092,4	K562	blood:
23	chr11:9635036..9635781-chr2:38977956..38978523,2	HCT-116	colon:
24	chr11:9593146..9594870-chr11:9635191..9636726,2	MCF-7	breast:
25	chr11:9634112..9636653-chr11:9679644..9682405,2	K562	blood:
26	chr11:9556276..9557533-chr11:9634416..9635753,10	K562	blood:
27	chr11:9587790..9592116-chr11:9635065..9637852,3	MCF-7	breast:
28	chr11:9634372..9636251-chr11:9769619..9770984,14	MCF-7	breast:
29	chr11:9593380..9601954-chr11:9626466..9639393,32	K562	blood:
30	chr11:9634859..9637342-chr11:9650481..9653341,3	K562	blood:
31	chr11:9554823..9558413-chr11:9633918..9637025,5	K562	blood:
32	chr11:9634169..9637157-chr11:9770583..9773571,2	MCF-7	breast:
33	chr11:9384438..9386089-chr11:9633922..9636673,2	MCF-7	breast:
34	chr11:9604448..9606704-chr11:9634785..9637173,2	K562	blood:
35	chr11:9633888..9638474-chr11:9645827..9648910,5	K562	blood:
36	chr11:9479781..9484865-chr11:9633607..9638660,10	K562	blood:
37	chr11:9629347..9631467-chr11:9634646..9636480,2	MCF-7	breast:
38	chr11:9586141..9589428-chr11:9634451..9638092,8	K562	blood:
39	chr11:9634122..9636323-chr11:9682911..9685347,2	MCF-7	breast:
40	chr11:9634807..9636345-chr11:9769633..9770231,4	K562	blood:
41	chr11:9635149..9636041-chr16:14395016..14395936,2	Hela-S3	cervix:
42	chr11:9586720..9588950-chr11:9633664..9636381,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133789	Chromatin interaction
ENSG00000245522	Chromatin interaction
ENSG00000238387	Chromatin interaction
ENSG00000239470	Chromatin interaction
ENSG00000246273	Chromatin interaction
ENSG00000181222	Chromatin interaction
ENSG00000166483	Chromatin interaction
ENSG00000243869	Chromatin interaction
ENSG00000268403	Chromatin interaction
ENSG00000243964	Chromatin interaction
ENSG00000174282	Chromatin interaction
ENSG00000255463	Chromatin interaction
ENSG00000166478	Chromatin interaction
ENSG00000115875	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11823865	1.00[EUR][1000 genomes]
rs11824009	1.00[EUR][1000 genomes]
rs11825542	1.00[EUR][1000 genomes]
rs11826225	1.00[AMR][1000 genomes]
rs12290340	1.00[AMR][1000 genomes]
rs12291871	1.00[AMR][1000 genomes]
rs12294282	1.00[AMR][1000 genomes]
rs1865560	1.00[EUR][1000 genomes]
rs34831554	1.00[EUR][1000 genomes]
rs4328248	1.00[EUR][1000 genomes]
rs4910057	1.00[EUR][1000 genomes]
rs57125659	1.00[AMR][1000 genomes]
rs57760683	1.00[EUR][1000 genomes]
rs58608279	1.00[EUR][1000 genomes]
rs59206639	1.00[EUR][1000 genomes]
rs59403069	1.00[EUR][1000 genomes]
rs60748041	1.00[EUR][1000 genomes]
rs61003414	1.00[EUR][1000 genomes]
rs61708669	1.00[EUR][1000 genomes]
rs7107607	1.00[EUR][1000 genomes]
rs7113100	1.00[EUR][1000 genomes]
rs7115224	1.00[EUR][1000 genomes]
rs7119701	1.00[EUR][1000 genomes]
rs73408270	1.00[EUR][1000 genomes]
rs73408291	1.00[EUR][1000 genomes]
rs7358421	1.00[AMR][1000 genomes]
rs9630162	1.00[AMR][1000 genomes]
rs9971601	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9634200-9636400	Flanking Active TSS	Dnd41	blood
2	chr11:9634400-9636000	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr11:9634400-9636200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:9634400-9636600	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr11:9634400-9636600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr11:9634400-9636800	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr11:9634400-9636800	Enhancers	Fetal Heart	heart
8	chr11:9634400-9636800	Flanking Active TSS	HUVEC	blood vessel
9	chr11:9634400-9637000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:9634600-9636000	Active TSS	Brain Cingulate Gyrus	brain
11	chr11:9634600-9636000	Active TSS	Brain Hippocampus Middle	brain
12	chr11:9634600-9636000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:9634600-9636200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr11:9634600-9636200	Active TSS	Brain Substantia Nigra	brain
15	chr11:9634600-9636200	Active TSS	Fetal Brain Female	brain
16	chr11:9634600-9636400	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr11:9634600-9636400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr11:9634600-9636400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr11:9634600-9636400	Active TSS	Brain Angular Gyrus	brain
20	chr11:9634600-9636400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr11:9634600-9636400	Active TSS	Thymus	Thymus
22	chr11:9634600-9636600	Flanking Active TSS	Primary B cells from peripheral blood	blood
23	chr11:9634600-9637000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:9634600-9637200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr11:9634800-9635800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:9634800-9635800	Active TSS	Colonic Mucosa	Colon
27	chr11:9634800-9636000	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr11:9634800-9636000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:9634800-9636000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:9634800-9636000	Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr11:9634800-9636000	Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr11:9634800-9636000	Active TSS	Colon Smooth Muscle	Colon
33	chr11:9634800-9636000	Active TSS	Esophagus	oesophagus
34	chr11:9634800-9636200	Active TSS	H9 Cell Line	embryonic stem cell
35	chr11:9634800-9636200	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr11:9634800-9636200	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr11:9634800-9636200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:9634800-9636200	Active TSS	Fetal Kidney	kidney
39	chr11:9634800-9636200	Flanking Active TSS	Placenta	Placenta
40	chr11:9634800-9636400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr11:9634800-9636400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:9634800-9636400	Active TSS	Brain Anterior Caudate	brain
43	chr11:9634800-9636400	Flanking Active TSS	Fetal Muscle Trunk	muscle
44	chr11:9634800-9636400	Flanking Active TSS	NHEK	skin
45	chr11:9634800-9636600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:9635000-9636000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:9635000-9636000	Active TSS	Gastric	stomach
48	chr11:9635000-9636000	Active TSS	Right Ventricle	heart
49	chr11:9635000-9636000	Active TSS	Small Intestine	intestine
50	chr11:9635000-9636200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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