Variant report

Variant	rs7125350
Chromosome Location	chr11:47040581-47040582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11039045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12226869	1.00[AFR][1000 genomes]
rs4647752	1.00[AFR][1000 genomes]
rs7938933	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026600-47042200	Weak transcription	Small Intestine	intestine
2	chr11:47026800-47041000	Weak transcription	Hela-S3	cervix
3	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:47027200-47042000	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:47027400-47056000	Weak transcription	Fetal Intestine Small	intestine
6	chr11:47027800-47048000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:47033000-47042000	Weak transcription	Fetal Lung	lung
8	chr11:47039600-47042000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:47040400-47041000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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