Variant report

Variant	rs7131062
Chromosome Location	chr11:35265161-35265162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35258928..35261277-chr11:35264057..35266573,2	K562	blood:
2	chr11:35253382..35256369-chr11:35263187..35265388,2	K562	blood:
3	chr11:35253382..35256689-chr11:35262779..35266276,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10488811	1.00[AMR][1000 genomes]
rs12280375	1.00[AMR][1000 genomes]
rs16927100	1.00[AMR][1000 genomes]
rs3847610	1.00[AMR][1000 genomes]
rs3847611	1.00[AMR][1000 genomes]
rs57427719	1.00[AMR][1000 genomes]
rs61045842	1.00[AMR][1000 genomes]
rs61142335	1.00[AMR][1000 genomes]
rs6484779	1.00[AMR][1000 genomes]
rs6484780	1.00[AMR][1000 genomes]
rs6484782	1.00[AMR][1000 genomes]
rs6484783	1.00[AMR][1000 genomes]
rs7102654	1.00[AMR][1000 genomes]
rs7103913	1.00[AMR][1000 genomes]
rs7114260	1.00[AMR][1000 genomes]
rs7121622	1.00[AMR][1000 genomes]
rs7130549	1.00[AMR][1000 genomes]
rs724474	1.00[AMR][1000 genomes]
rs73436972	1.00[AMR][1000 genomes]
rs73436976	1.00[AMR][1000 genomes]
rs73439121	1.00[AMR][1000 genomes]
rs73439149	1.00[AMR][1000 genomes]
rs7926777	1.00[AMR][1000 genomes]
rs7926910	1.00[AMR][1000 genomes]
rs7927023	1.00[AMR][1000 genomes]
rs7927263	1.00[AMR][1000 genomes]
rs7934506	1.00[AMR][1000 genomes]
rs7936164	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7939095	1.00[AMR][1000 genomes]
rs7939877	1.00[AMR][1000 genomes]
rs7939959	1.00[AMR][1000 genomes]
rs7940317	1.00[AMR][1000 genomes]
rs7945276	1.00[AMR][1000 genomes]
rs7949171	1.00[AMR][1000 genomes]
rs7952042	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv897221	chr11:35242907-35265444	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv972895	chr11:35259840-35266507	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv975098	chr11:35261190-35266507	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35255400-35266800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:35258400-35267400	Weak transcription	Aorta	Aorta
3	chr11:35258400-35269000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:35258800-35267400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:35259200-35270200	Weak transcription	Stomach Mucosa	stomach
6	chr11:35260800-35270200	Weak transcription	Fetal Lung	lung
7	chr11:35262600-35269800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:35262600-35270600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr11:35263000-35265400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr11:35263000-35266400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:35263000-35270000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr11:35263000-35270000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr11:35263000-35270200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:35263000-35270200	Weak transcription	Fetal Brain Male	brain
15	chr11:35263400-35265600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr11:35263400-35265800	Enhancers	Primary T cells from cord blood	blood
17	chr11:35263400-35270600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:35263600-35270000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr11:35263800-35265400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr11:35264000-35267200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:35264400-35267400	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:35264400-35268200	Weak transcription	NHLF	lung
23	chr11:35264400-35281800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:35264600-35266800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:35264600-35267000	Weak transcription	NHDF-Ad	bronchial
26	chr11:35264600-35267800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:35264600-35268000	Weak transcription	HSMMtube	muscle
28	chr11:35264600-35268400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:35264800-35265400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:35264800-35265800	Enhancers	Pancreas	Pancrea
31	chr11:35264800-35268200	Weak transcription	Osteobl	bone
32	chr11:35264800-35270000	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr11:35264800-35270200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:35264800-35281800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:35265000-35265200	Enhancers	Psoas Muscle	Psoas
36	chr11:35265000-35267600	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links