Variant report

Variant	rs73436976
Chromosome Location	chr11:35239783-35239784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:35239563-35239950	U87	brain:	n/a	n/a
2	POLR2A	chr11:35235854-35244123	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr11:35220356-35243977	U87	brain:	n/a	n/a
4	POLR2A	chr11:35239540-35239942	U87	brain:	n/a	n/a
5	POLR2A	chr11:35237308-35239908	PANC-1	pancreas:	n/a	n/a
6	POLR2A	chr11:35237283-35244142	U87	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000255443	TF binding region
CD44	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10488811	1.00[AMR][1000 genomes]
rs12280375	1.00[AMR][1000 genomes]
rs16927100	1.00[AMR][1000 genomes]
rs3847610	1.00[AMR][1000 genomes]
rs3847611	1.00[AMR][1000 genomes]
rs57427719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61045842	1.00[AMR][1000 genomes]
rs61142335	1.00[AMR][1000 genomes]
rs6484779	1.00[AMR][1000 genomes]
rs6484780	1.00[AMR][1000 genomes]
rs6484782	1.00[AMR][1000 genomes]
rs6484783	1.00[AMR][1000 genomes]
rs7102654	1.00[AMR][1000 genomes]
rs7103913	1.00[AMR][1000 genomes]
rs7114260	1.00[AMR][1000 genomes]
rs7121622	1.00[AMR][1000 genomes]
rs7130549	1.00[AMR][1000 genomes]
rs7131062	1.00[AMR][1000 genomes]
rs724474	1.00[AMR][1000 genomes]
rs73436972	1.00[AMR][1000 genomes]
rs73439121	1.00[AMR][1000 genomes]
rs73439149	1.00[AMR][1000 genomes]
rs7926777	1.00[AMR][1000 genomes]
rs7926910	1.00[AMR][1000 genomes]
rs7927023	1.00[AMR][1000 genomes]
rs7927263	1.00[AMR][1000 genomes]
rs7934506	1.00[AMR][1000 genomes]
rs7936164	1.00[AMR][1000 genomes]
rs7939095	1.00[AMR][1000 genomes]
rs7939877	1.00[AMR][1000 genomes]
rs7939959	1.00[AMR][1000 genomes]
rs7940317	1.00[AMR][1000 genomes]
rs7945276	1.00[AMR][1000 genomes]
rs7949171	1.00[AMR][1000 genomes]
rs7952042	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35200600-35244800	Weak transcription	Fetal Brain Male	brain
2	chr11:35214200-35240800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:35214600-35250600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:35215600-35241200	Weak transcription	Small Intestine	intestine
5	chr11:35222600-35240600	Weak transcription	Spleen	Spleen
6	chr11:35224000-35241600	Weak transcription	Left Ventricle	heart
7	chr11:35226200-35244800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:35227800-35240400	Weak transcription	Colonic Mucosa	Colon
9	chr11:35231400-35240400	Weak transcription	Fetal Lung	lung
10	chr11:35231600-35243600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:35232200-35245400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:35232400-35245600	Genic enhancers	NHDF-Ad	bronchial
13	chr11:35232800-35239800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:35232800-35240600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:35233200-35244400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:35233400-35259600	Weak transcription	Liver	Liver
17	chr11:35234000-35239800	Genic enhancers	Primary T cells from cord blood	blood
18	chr11:35234000-35239800	Genic enhancers	Primary T cells fromperipheralblood	blood
19	chr11:35234000-35239800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
20	chr11:35234200-35247400	Weak transcription	Fetal Intestine Small	intestine
21	chr11:35234600-35240200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr11:35234600-35241600	Genic enhancers	NHLF	lung
23	chr11:35234800-35240400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr11:35235200-35249200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:35235800-35244200	Strong transcription	Fetal Muscle Leg	muscle
26	chr11:35236000-35243000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:35236000-35245200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:35236000-35247600	Strong transcription	Dnd41	blood
29	chr11:35236000-35248000	Strong transcription	Primary hematopoietic stem cells	blood
30	chr11:35236200-35242000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:35236200-35252200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr11:35236200-35254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:35236400-35240600	Genic enhancers	Muscle Satellite Cultured Cells	--
34	chr11:35236400-35241800	Strong transcription	A549	lung
35	chr11:35236400-35242000	Genic enhancers	Fetal Thymus	thymus
36	chr11:35236400-35253400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:35236400-35253400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr11:35236800-35240000	Weak transcription	GM12878-XiMat	blood
39	chr11:35236800-35248400	Strong transcription	Adipose Nuclei	Adipose
40	chr11:35236800-35253200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:35236800-35259600	Weak transcription	Psoas Muscle	Psoas
42	chr11:35237000-35240600	Weak transcription	Placenta	Placenta
43	chr11:35237000-35240600	Genic enhancers	NH-A	brain
44	chr11:35237000-35241000	Weak transcription	HSMMtube	muscle
45	chr11:35237000-35241200	Genic enhancers	Osteobl	bone
46	chr11:35237000-35241800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:35237000-35247000	Strong transcription	Hela-S3	cervix
48	chr11:35237000-35253000	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:35237000-35254600	Strong transcription	HSMM	muscle
50	chr11:35237000-35259600	Weak transcription	HUVEC	blood vessel

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